View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-12 (Length: 606)
Name: NF4226-Insertion-12
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-12 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 132 - 606
Target Start/End: Original strand, 33680570 - 33681050
Alignment:
| Q |
132 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttga |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
33680570 |
gttatatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaaactgaattcttttatgtggttga |
33680669 |
T |
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| Q |
231 |
aatcaaatcagcctctcaatataagtgtttccatgtaattgtttattattcgctttctcttcaggtgcctatcagtgtggcataaactgtgactttgtac |
330 |
Q |
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| T |
33680670 |
aatcaaatcagcctctcagcataagtgtttccacgtaattgtttattattcgctttctctttaggtgcttctcagtgtggcataaactgtgactttgtac |
33680769 |
T |
|
| Q |
331 |
atttctgagtgag--tctctctcagcacgcctcgtgcggggggattcactcttggtttaatattatattccattttaatttgtt---nnnnnnnnnttag |
425 |
Q |
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| T |
33680770 |
atttctgagtgagtctctctctcagtacgccttgtgcggggtgattcactcttggtttaatattatattccattttgacttcttaaaaaaaaaaaattag |
33680869 |
T |
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| Q |
426 |
acaatcacaacgatgcaatataaatgccgcaactttcaaataaataaatttgtaccataatctttttctaatctcataagtcatactataggtgcaatat |
525 |
Q |
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| T |
33680870 |
acaatcacaacgatgcagtataaatgccgcaactttcaaataaataaatttgtaccataatctttttctaatctcataagtcatactataggtgcaatat |
33680969 |
T |
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| Q |
526 |
atatagttaagtgatcgaccgattcacccagcatttgtattggtttctagttgaaatataaatgccgtttatcatggtgga |
606 |
Q |
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| T |
33680970 |
atatagttaagtgatcgaccgactcacccagcatttgtattggtttctagttgaaatataaatgccgtttatcatggtgga |
33681050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 33678345 - 33678472
Alignment:
| Q |
8 |
actatacccttaattagacaaaatatatgatgatgctaaagctagtaggtgactgatgcgagctgaacacttccatatgacttgtttcaatacttgtttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33678345 |
actatacccttaattagacaaaatatatgatgatgctaaagctagtaggtgactgatgcgagctgaacacttccatatgacttgtttcaatacttgtttg |
33678444 |
T |
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| Q |
108 |
actgatactcctgctaaccatttagtta |
135 |
Q |
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| T |
33678445 |
actgatactcctgctaaccatttagtta |
33678472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 20114646 - 20114537
Alignment:
| Q |
135 |
atatgaaaagaacgtaacaaccgtatcttaaaaaatgcggtgtctgaaccatgtaacctttttgacaaagtgaagctgaatt-ttttatgtggttgaaat |
233 |
Q |
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| T |
20114646 |
atatggaaagaacgaaacaaccgcagcttaaaaaatgtggcttatgatccgtgtaccctttctgacaaagtgaagttgaattcgtttatgtggttgaaaa |
20114547 |
T |
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| Q |
234 |
caaatcagcc |
243 |
Q |
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| T |
20114546 |
caaatcagcc |
20114537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 37124880 - 37124942
Alignment:
| Q |
350 |
tcagcacgcctcgtgcggggggattcactcttggtttaatattatattccattttaatttgtt |
412 |
Q |
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| T |
37124880 |
tcagcacgccttgtgcagagtgaatcacttttggtttaatattatattccattttgatttgtt |
37124942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 248033 - 248088
Alignment:
| Q |
357 |
gcctcgtgcggggggattcactcttggtttaatattatattccattttaatttgtt |
412 |
Q |
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| T |
248033 |
gccttgtgcggagcgaatcacttttggtttaatattatattccattttgatttgtt |
248088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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