View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-13 (Length: 540)
Name: NF4226-Insertion-13
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 7 - 540
Target Start/End: Complemental strand, 43832212 - 43831678
Alignment:
| Q |
7 |
agcaaccactctgaaagagcaaataacaaatcagaaggcacggttttctgataagcaaacttccaaccaacagcaatcaactcaccactcagcaacattc |
106 |
Q |
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| T |
43832212 |
agcaaccactctgaaagagcaaataacaaatcagaaggcacagttttctgataggcaaacttccaaccaacagcaatcaactcaccactcagcaacattc |
43832113 |
T |
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| Q |
107 |
cacatttcatattgcgtaagtgtttatgcataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctcttt |
206 |
Q |
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| T |
43832112 |
cacatttcatattgcgtaagtgtttatgcataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctcttt |
43832013 |
T |
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| Q |
207 |
caaacaccacactgttacgcaagtgcttagatagttagatcataaa-gtataggataaaccgatttaagctctttgaaatgtgcttaaagtgcattggtc |
305 |
Q |
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| T |
43832012 |
caatcaccacactgttacgcaagtgcttagatagttagatcataaaagtataggataaaccgatttaagctctttgaaatgtgcttaaagtgcattggtc |
43831913 |
T |
|
| Q |
306 |
aatctgctatttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaag |
405 |
Q |
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| T |
43831912 |
aatctgctatttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaag |
43831813 |
T |
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| Q |
406 |
tgatagcaaaacagcagatgtctaatatttccaacctaaaaaacctgacactaaattattggattagcactaattactctatgaagaggatatgagtagc |
505 |
Q |
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| T |
43831812 |
tgatagcaaaacagcagatgtctaatattttcaacctaaaaaacctgacactaaattattggattagcactaattactctatgaagaggatatgagtagc |
43831713 |
T |
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| Q |
506 |
atttgaactttgaagtgctttcctacattagttaa |
540 |
Q |
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| T |
43831712 |
atttgaactttgaagtgctttcctacattagttaa |
43831678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 43826896 - 43826784
Alignment:
| Q |
123 |
taagtgtttatgcataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctctttcaaacaccacactgtt |
222 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||| | || ||| ||||||||||||||| || ||| ||||| |
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| T |
43826896 |
taagtgtttatgtataagttgttcgaagaaaaatttcacataacctctacatttacgtttattc-ttgataccataagctctttcaagca-cac-ctgtt |
43826800 |
T |
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| Q |
223 |
acgcaagtgcttagat |
238 |
Q |
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| T |
43826799 |
acacaagtgtttagat |
43826784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 425
Target Start/End: Complemental strand, 43826712 - 43826603
Alignment:
| Q |
315 |
tttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaagtgatagcaa |
414 |
Q |
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|||||||||| |||| ||||||| ||||||| ||||| ||| |||||||||||| || || |||||||||||||||||||| || | ||| |||||| |
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| T |
43826712 |
tttggctgtgggccataagaatatatgaaat-caaaaaacagctgcactctaaaaatatgtatactacttgtacgaccaagacttaaaacgtgctagcaa |
43826614 |
T |
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| Q |
415 |
aacagcagatg |
425 |
Q |
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| T |
43826613 |
aataacagatg |
43826603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 43833397 - 43833317
Alignment:
| Q |
124 |
aagtgtttatgcataagttgttcaaagaaaaatttcacataaccgc-tacataaacgtttatgcttttatatcataagctctttc |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| | ||| ||| |||||||||||| |
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| T |
43833397 |
aagtgtttatgcataagtt---caaagaaaaatttcacataacctcttgcataaacgtttatac-tttgtattataagctctttc |
43833317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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