View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-14 (Length: 527)

Name: NF4226-Insertion-14
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-14
NF4226-Insertion-14
[»] chr1 (3 HSPs)
chr1 (7-157)||(28451522-28451672)
chr1 (455-527)||(28451191-28451263)
chr1 (34-148)||(30737693-30737807)
[»] chr4 (2 HSPs)
chr4 (34-151)||(5313699-5313816)
chr4 (38-114)||(16839438-16839514)
[»] chr6 (1 HSPs)
chr6 (38-114)||(7499963-7500039)
[»] chr5 (1 HSPs)
chr5 (38-114)||(9505112-9505188)
[»] chr3 (1 HSPs)
chr3 (392-456)||(12748922-12748986)
[»] chr2 (2 HSPs)
chr2 (38-114)||(45495649-45495725)
chr2 (38-114)||(45503391-45503467)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 28451672 - 28451522
Alignment:
Q  7 aggaattggtaacgtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtatt 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28451672 aggaattggtaaagtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttttatgtgctaaatatgagaagcaatcttatgagtatt 28451573  T
Q  107 ggtaaattgttgtcaaagggctatactatgaagatggaagcacatacaact 157  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28451572 ggtaaattgttgccaaagggctatactatgaagatggaagcacatacaact 28451522  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 455 - 527
Target Start/End: Complemental strand, 28451263 - 28451191
Alignment:
Q  455 agtaagtatgcattagacttagcaaagcatcaagtggttcatgaaaaagtaaacacattgagacatgtttcta 527  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28451263 agtaagtatgcattagacttagcaaagcatcaagtggctcatgaaaaagtaaacacattgagacatgtttcta 28451191  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 30737693 - 30737807
Alignment:
Q  34 aaaagatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaattgttgtcaaagggctatact 133  Q
    |||| ||||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||||| || ||||| ||| ||||  ||  |||||| | | ||    
T  30737693 aaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaattactgcaaaagggttgtgct 30737792  T
Q  134 atgaagatggaagca 148  Q
    || ||||||||||||    
T  30737793 attaagatggaagca 30737807  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 5313699 - 5313816
Alignment:
Q  34 aaaagatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaattgttgtcaaagggctatact 133  Q
    |||||||||||||||| ||||||||||| |||| || ||||| | |||||||||||| ||||| || ||||  ||  ||||| ||  ||| |  ||||||    
T  5313699 aaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgagaagtaatctcattagtacaggccaattgctgcaaaatgtatatact 5313798  T
Q  134 atgaagatggaagcacat 151  Q
    ||||| ||||||||||||    
T  5313799 atgaaaatggaagcacat 5313816  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 16839514 - 16839438
Alignment:
Q  38 gatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaatt 114  Q
    |||||||||||||| |  |||||| ||||||| ||||| | ||| |||||||||||||| || ||||||||| ||||    
T  16839514 gatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaatt 16839438  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 7500039 - 7499963
Alignment:
Q  38 gatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaatt 114  Q
    |||| ||||||||| |  |||||| ||||||| ||||| | ||| |||||||||||||| || ||||||||| ||||    
T  7500039 gatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggttaatt 7499963  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 9505112 - 9505188
Alignment:
Q  38 gatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaatt 114  Q
    |||| ||||||||| |  |||||| ||||||| ||||| | ||| |||||||||||||| || ||||||||| ||||    
T  9505112 gatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaatt 9505188  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 12748986 - 12748922
Alignment:
Q  392 atcaacatgcttatgttggaaatgaatctaaaggaagttgagaagatgtaattgctaattgatag 456  Q
    ||||||||||||||| | |||||||| ||| | ||||  ||||||||| |||| |||||||||||    
T  12748986 atcaacatgcttatgctagaaatgaagctagaagaagaagagaagatggaattactaattgatag 12748922  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 45495725 - 45495649
Alignment:
Q  38 gatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaatt 114  Q
    |||||||||||||| |  |||| | ||||||| ||||| | ||| |||||||||||||| || ||||||||| ||||    
T  45495725 gatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaatt 45495649  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 45503467 - 45503391
Alignment:
Q  38 gatggcaagaaagcatatatcacttatgtgttatatgtgctaaatatgagaagcaatcttatgagtattggtaaatt 114  Q
    |||||||||||||| |  |||| | ||||||| ||||| | ||| |||||||||||||| || ||||||||| ||||    
T  45503467 gatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaatt 45503391  T

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