View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4226-Insertion-16 (Length: 497)
Name: NF4226-Insertion-16
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 50363831 - 50364325
Alignment:
| Q |
6 |
cattaccatgatgatgaaatgtttcttatgttacaagttgaaccacgtgcaatgaatatgaaaaacacgttattttcctcaatccaatctgccagcagag |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
50363831 |
cattaccataatgatgaaatgtttcttatgttacaagttgaaccacatgcaatgaatatgaaaaacacattattttcctcaatccaatctgccaacagag |
50363930 |
T |
|
| Q |
106 |
cttgatgccccagtaaaaacacccgta------catggagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacg |
199 |
Q |
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||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50363931 |
tttgatgccc-agtaaaaatgctcgtatttccacatggagaatattagacaaacatataatcccatagaaacaaaattgaaatgttccatcatggttacg |
50364029 |
T |
|
| Q |
200 |
cactaagtcaccaaacccatgattagtaagagcacttccatccatgttgagaaccatgccatccacatcccatttatgccaacacacctcacaagttgtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50364030 |
cactaagtcaccaaacccatgattagtaagagcacttccatccatgttgagaaccatgccatccacatcccatttatgtcaacacacctcacaagttgtt |
50364129 |
T |
|
| Q |
300 |
cgagtggagctggaggctaaactttcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtacttcacatgacttattccct |
399 |
Q |
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|||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |
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| T |
50364130 |
cgagtggagcaggaggctggactttcaaacgtctgcttggaaacttgtagataaataaaaatagatgttgtgatctggtatttcacatgacttattccct |
50364229 |
T |
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| Q |
400 |
caaaaataaatttgttgcgagagatccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaag |
497 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50364230 |
caaaaataaatttgttgcgagagatccaa--atatcccacattatcaatggagctaagatacccacttcaaccactaaggtcgctatgatcttcgaag |
50364325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 133 - 497
Target Start/End: Complemental strand, 10795281 - 10794910
Alignment:
| Q |
133 |
catggagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaaccc---at------gatt |
223 |
Q |
| |
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|||| |||||||| ||||||| || | ||||||| |||| ||||||||| ||||||||||||||| |||| ||| | | |||||| || |||| |
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| T |
10795281 |
catgaagaatattggacaaacctacactcccatagaaacgaaattgaaaggttccatcatggttaagcaccaagccgctaaaccctccattccttggatt |
10795182 |
T |
|
| Q |
224 |
agtaagagcacttccatccatgttgagaaccatgccatccacatcccatttatgccaacacacctcacaagttgttcgagtggagctggaggctaaactt |
323 |
Q |
| |
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|||| |||||||||||| | ||||||| |||| ||||| |||||| ||||| |||||||||||||| |||||||||| |||| ||||| | |||| |
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| T |
10795181 |
agtataagcacttccatctacattgagaatcatggcatcctcatcccctttattccaacacacctcacgagttgttcgatgggagtgggaggttggactt |
10795082 |
T |
|
| Q |
324 |
tcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtacttcacatgacttattccctcaaaaataaatttgttgcgagaga |
423 |
Q |
| |
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| |||| |||||||||||||||||| | | |||||||||||||| | || | |||||||| | || || |||||| ||||||||||||||||||||||| |
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| T |
10795081 |
cccaatgcctgcttggaaacttgtagctgagtaaagatagatgttatgatctagtacttcataggagttgttcccttaaaaataaatttgttgcgagaga |
10794982 |
T |
|
| Q |
424 |
tccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaag |
497 |
Q |
| |
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||||| |||| ||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||| |||| |
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| T |
10794981 |
tccaa--atattccacattatcaatggagctaagatacccacttcatccactaatgtcgctaggatctttgaag |
10794910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 300
Target Start/End: Complemental strand, 15581582 - 15581406
Alignment:
| Q |
133 |
catggagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaa---------cccatgatt |
223 |
Q |
| |
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|||| |||||||||||||||| || | ||||||| |||| ||||||||||||||||||||| |||||||| ||| ||||||| ||| |||| |
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| T |
15581582 |
catgaagaatattagacaaacctacactcccatagaaaccaaattgaaatgttccatcatgcttacgcaccaagccaccaaagccttccttccctggatt |
15581483 |
T |
|
| Q |
224 |
agtaagagcacttccatccatgttgagaaccatgccatccacatcccatttatgccaacacacctcacaagttgttc |
300 |
Q |
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||||||||||||||| |||| ||||||| ||| |||| |||||| ||||| ||||||||||||||| ||||||| |
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| T |
15581482 |
agtaagagcacttccgtccacattgagaatcattgcatctccatcccctttattccaacacacctcacaggttgttc |
15581406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 133 - 481
Target Start/End: Complemental strand, 41405805 - 41405456
Alignment:
| Q |
133 |
catggagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaacccat---------gatt |
223 |
Q |
| |
|
||||||||||||| ||||||| || | | ||||| |||| |||||||||||| |||||||||||| |||| ||| |||||||||| |||| |
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| T |
41405805 |
catggagaatattggacaaacctacacttccatagaaaccaaattgaaatgtcccatcatggttatgcaccaagccaccaaaccccgtcttccctagatt |
41405706 |
T |
|
| Q |
224 |
agtaagagcacttccatccatgttgagaaccatgccatccacatcccatttatgccaacacacctcacaagttgttcgagtggagctggaggctaaactt |
323 |
Q |
| |
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||||| |||||||||||| | ||||||| |||| ||||| ||||| ||||| |||||||||||||||| |||||||| ||| |||| | | || |
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| T |
41405705 |
agtaaaagcacttccatctacattgagaatcatgtcatcctcatcctctttattccaacacacctcacaaattgttcga-tgg-----gaggttggattt |
41405612 |
T |
|
| Q |
324 |
tcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtacttcacatgacttattccctcaaaaataaatttgttgcgagaga |
423 |
Q |
| |
|
||| |||||||||||||| ||||| | | ||||| |||||||| | || ||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
41405611 |
caaaacgtctgcttggaaacctgtagttgagtaaagttagatgttatgatgtggtacttcacatgagttattcccttaaaaataaatttgttgcgagaga |
41405512 |
T |
|
| Q |
424 |
tccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggtt |
481 |
Q |
| |
|
||||| |||| |||| |||||||| ||| ||||||||||||| || ||||||||||| |
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|
| T |
41405511 |
tccaa--atattccacgttatcaatagagctaagatacccactccatccactaaggtt |
41405456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 7219693 - 7219742
Alignment:
| Q |
168 |
aaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaaccc |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7219693 |
aaaccaaattgaaatgttccatcatggttacgcactaagccaccaaaccc |
7219742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 7219538 - 7219602
Alignment:
| Q |
20 |
tgaaatgtttcttatgttacaagttgaaccacgtgcaatgaatatgaaaaacacgttattttcct |
84 |
Q |
| |
|
||||||||||| | ||| |||||||||| ||| ||||| |||||||| |||||| ||| |||||| |
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|
| T |
7219538 |
tgaaatgtttcctctgtgacaagttgaatcacatgcaaggaatatgagaaacacattactttcct |
7219602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 133 - 497
Target Start/End: Complemental strand, 50076650 - 50076279
Alignment:
| Q |
133 |
catggagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaaccc---at------gatt |
223 |
Q |
| |
|
|||| |||||||| ||||||| || | ||||||| |||| ||||||||| ||||||||||||||| |||| ||| | | |||||| || |||| |
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|
| T |
50076650 |
catgaagaatattggacaaacctacactcccatagaaaccaaattgaaaggttccatcatggttaagcaccaagccgctaaaccctccattccttggatt |
50076551 |
T |
|
| Q |
224 |
agtaagagcacttccatccatgttgagaaccatgccatccacatcccatttatgccaacacacctcacaagttgttcgagtggagctggaggctaaactt |
323 |
Q |
| |
|
|||| |||||||||||| | ||||||| |||| ||||| |||||| ||||| |||||||| ||||| |||||||||| ||| ||||| | |||| |
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|
| T |
50076550 |
agtataagcacttccatctacattgagaatcatggcatcctcatcccctttattccaacacatctcacgagttgttcgatgagagtgggaggttggactt |
50076451 |
T |
|
| Q |
324 |
tcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtacttcacatgacttattccctcaaaaataaatttgttgcgagaga |
423 |
Q |
| |
|
| |||| |||||||||||||||||| | | |||||||||||||| | || | |||||||| | || || || ||| ||||||||||||||||||||||| |
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|
| T |
50076450 |
cccaatgcctgcttggaaacttgtagctgagtaaagatagatgttatgatctagtacttcataggagttgtttccttaaaaataaatttgttgcgagaga |
50076351 |
T |
|
| Q |
424 |
tccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaag |
497 |
Q |
| |
|
| ||| |||| ||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||| |||| |
|
|
| T |
50076350 |
ttcaa--atattccacattatcaatggagctaagatacccacttcatccactaatgtcgctaggatctttgaag |
50076279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 47748606 - 47748689
Alignment:
| Q |
133 |
catggagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaacc |
216 |
Q |
| |
|
||||||||||||| ||||||| || | ||||||| |||| ||||| |||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
47748606 |
catggagaatattggacaaacctacactcccatagaaaccaaattaaaatgttccatcatggttacgcaccaagccaccaaacc |
47748689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 287 - 480
Target Start/End: Complemental strand, 25584273 - 25584082
Alignment:
| Q |
287 |
ctcacaagttgttcgagtggagctggaggctaaactttcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtacttcaca |
386 |
Q |
| |
|
||||||||||||| || |||| | |||| | |||| |||| |||||||| ||||||||||| || |||| ||||||||||| || |||||||||||| |
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|
| T |
25584273 |
ctcacaagttgtttgatgggagttagaggttggacttccaaacgtctgcttcgaaacttgtagccaagtaaatatagatgttgtgatctggtacttcaca |
25584174 |
T |
|
| Q |
387 |
tgacttattccctcaaaaataaatttgttgcgagagatccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggt |
480 |
Q |
| |
|
| ||||||||| ||| |||||||| |||||||||||||| |||| | ||||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
25584173 |
aaagttattccctgaaagataaatttactgcgagagatccaa--atattcaacattatcaatggagctaagatacccacttcgaccgctaaggt |
25584082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 25584490 - 25584434
Alignment:
| Q |
34 |
tgttacaagttgaaccacgtgcaatgaatatgaaaaacacgttattttcctcaatcc |
90 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
25584490 |
tgttacaagttgaaccacatgcaaggaatatgaaaaacaaattattttcctaaatcc |
25584434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 8865420 - 8865499
Alignment:
| Q |
137 |
gagaatattagacaaacatataatcccataaaaacaaaattgaaatgttccatcatggttacgcactaagtcaccaaacc |
216 |
Q |
| |
|
||||||||| ||||||| || | ||||||| |||| ||||| ||||||| ||||||||||||| || ||| ||||||||| |
|
|
| T |
8865420 |
gagaatattggacaaacctacactcccatagaaaccaaatttaaatgtttcatcatggttacgtaccaagccaccaaacc |
8865499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 491
Target Start/End: Complemental strand, 34540598 - 34540503
Alignment:
| Q |
394 |
ttccctcaaaaataaatttgttgcgagagatccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatct |
491 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||| | ||||||||| ||| ||||||| |||||||| |||||||| |||||| ||||| |
|
|
| T |
34540598 |
ttccctaaaaaataaatttgttacgagagatccaa--atattcttcattatcaaccgagctaagatatccacttcacccactaagattgctaggatct |
34540503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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