View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-18 (Length: 469)
Name: NF4226-Insertion-18
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-18 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Complemental strand, 22124409 - 22123956
Alignment:
| Q |
7 |
agtgccgacgtccctttggagaatcggaattgtcattgcacttgaagcctagtacctaccaaatcacaacaaattattcattatacattttgacgacttg |
106 |
Q |
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| T |
22124409 |
agtgctgacgtccctttggagaatcggaattgtcattgcacttgaagcctagcacctaccaaatcacaacaaattattcattatacattttgacgacttg |
22124310 |
T |
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| Q |
107 |
cctgtttggaataaaactcgaacaaaataatcatataacagaaggaaaaataagagacattattttaggaaatacataaagcttgtattttgatggctaa |
206 |
Q |
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| T |
22124309 |
cctgtttggaataaaactcgaacaaaataatcatataacagaaggaaaaataagagacattattttaggaaatacataaagcttgtattttgatggctaa |
22124210 |
T |
|
| Q |
207 |
aaagtaaatatcaaaaagaagattgtatccagttatatgaaagaaaaaacacaccttaattttcctgaagtaggattgagatttcaacttcatgagtgtc |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22124209 |
aaagtaaatatcaaaa-gaagattgtatccagttatatgaaagaaaaaacacaccttaattttcctgaagtaggattgagatttcaacttcatgagtgtc |
22124111 |
T |
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| Q |
307 |
gaaagacatctccatcaatttctacagggggaacatgctcgacgacagccatcccatgcacaaatctagcattcatatcccaaatgctgagaacttgaag |
406 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
22124110 |
gaaagacatctccatcgatttctacaaggggaacatgctcgacgacagccatcccatgcacaaatctagcatgcatatcccaaatgctgagaacttgatg |
22124011 |
T |
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| Q |
407 |
cttctctaagttctgaattccagtggggaccctctccagttggggaatacttcat |
461 |
Q |
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| T |
22124010 |
cttctctaagttctgaattccagtggagaccctctccagttggggaatacttcat |
22123956 |
T |
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