View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4226-Insertion-20 (Length: 436)
Name: NF4226-Insertion-20
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 9e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 224 - 433
Target Start/End: Original strand, 29704858 - 29705057
Alignment:
| Q |
224 |
gatcacagtagatgaatggaaaccgttgattatcaagcaagttacattgcgtagattttttagtgtaaaaacacattattaatccctatatggcataagt |
323 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29704858 |
gatcacagtagatgaattgaaaccgttgataatcaagcaagttacattgcgtagattttttagtgtaaaaacacattat----------atggcataagt |
29704947 |
T |
|
| Q |
324 |
atactctctaaagaatggtactcatgcaatttattgtgtccctctggtattcaaggagtttcccagtaatacaaaaaacattcgtcgtcgatgcagtaat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
29704948 |
atactctctaaagaatggtactcatgcaatttattgtgtcactctggtattcaaggagcttcccagtaatacaaaaaacattcatcgtcaatgcagtaat |
29705047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 29704220 - 29704324
Alignment:
| Q |
31 |
aactactgttatcttgtgctatcgatttctacgtaattgcagaggttgaaaatgcatcgatcaaagaaaccccacaacgaattaaaattggtggagataa |
130 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29704220 |
aactactgttatcttgcgctatcgatttctacataattgcagaggttgaaaatgcatcgatcaaagaaaccccacaacgaattaaaattggtggagatga |
29704319 |
T |
|
| Q |
131 |
tgaaa |
135 |
Q |
| |
|
||||| |
|
|
| T |
29704320 |
tgaaa |
29704324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 373
Target Start/End: Original strand, 29688873 - 29689026
Alignment:
| Q |
224 |
gatcacagtagatgaatggaaaccgttg-attatcaagc--aagttacattgcgtagattttttagtgtaaaaacacattattaatccctatatggcata |
320 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29688873 |
gatcacagtagatgaatggaaaccgtagaataatctagcaaaagttacattgcatagattttttagtgtaaaaacacattattaatccctatatggcttg |
29688972 |
T |
|
| Q |
321 |
agtatactctctaaaga-atggtactcatgcaatttattgtgtccctctggtat |
373 |
Q |
| |
|
||||||||||| ||| | ||| || ||||||||||||||||||| ||||||||| |
|
|
| T |
29688973 |
agtatactctcgaaatatatgatattcatgcaatttattgtgtcactctggtat |
29689026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 224 - 436
Target Start/End: Original strand, 29683587 - 29683814
Alignment:
| Q |
224 |
gatcacagtagatgaatggaaaccgt-tgattatcaagc--aagttacattgcgtag-attttt-tagtgtaaaaacacattattaatccctatatggca |
318 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
29683587 |
gatcatagtagatgaatggaaaccgtaaaataatcaagcaaaagttacattgcgtagcatttttatagtgtaagaacacattattaatccccatatagca |
29683686 |
T |
|
| Q |
319 |
taagtatactctctaaagaatggtactcatgcaatttattgtgtccctctggtat-------tcaaggagt---ttcccagtaatacaaaaaacattcgt |
408 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||||||||| |||| |||| |||||| | ||||||||||||||||||||||| | |
|
|
| T |
29683687 |
taagtatactttctaaagtatgatactcatgcaatttattgtgtcactctagtataactaaatcaaggcttgccttcccagtaatacaaaaaacatttat |
29683786 |
T |
|
| Q |
409 |
cgtcgatgcagtaatacttgtgagttga |
436 |
Q |
| |
|
|||| | ||||||||||||||||||||| |
|
|
| T |
29683787 |
cgtcaacgcagtaatacttgtgagttga |
29683814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University