View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-21 (Length: 408)
Name: NF4226-Insertion-21
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 40174987 - 40174583
Alignment:
| Q |
8 |
ctgataccccactaatttgcatgcattgcgaccttaattacatgaagtt-gttaccggcattacgaatcctacagaatccaaattaataacgcaacaatc |
106 |
Q |
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| T |
40174987 |
ctgataccccactaatttgcatgcattgcaaccttaattacatgaagttagttaccggcattacgaatcctacaaaatccaaattaataatgcaacagtc |
40174888 |
T |
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| Q |
107 |
aaaaccnnnnnnnnattgttaactgaacagtt-cccaccctcaactctcacatgtattgaactatgattttt---atcatgaatcatatctatactctat |
202 |
Q |
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| T |
40174887 |
aaaacctttttttt-ttgttaactgaacagtttcccaccctcaactctcacatgt-ttgaactgtgattttttttatcatgaatcatatctatactctat |
40174790 |
T |
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| Q |
203 |
acatagatatacttagatag-tgaagtccactttctctaattactagactatcctccatttgatttacccttttaaccggtgagaaaatatttttaatat |
301 |
Q |
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| T |
40174789 |
acatagatattcttagataggttaagtccactttctctaattactagactatcctccatttgatttacccttttaaccggtgagaaaatatttttaatat |
40174690 |
T |
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| Q |
302 |
taatccaaatgattaaggcagtataatacatttccgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccata |
401 |
Q |
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| T |
40174689 |
taatccaaataattaaggcaatataatacatttccgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccata |
40174590 |
T |
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| Q |
402 |
ttgaggg |
408 |
Q |
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| T |
40174589 |
ttgaggg |
40174583 |
T |
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