View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-23 (Length: 380)
Name: NF4226-Insertion-23
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-23 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 12829525 - 12829897
Alignment:
| Q |
8 |
ggttgaaagaaaaagccacaaatttcatgcatatgcaatagtgatgtgtaatgtgcaagacatcaagagcaacacattaactgtggctttgtaggttgtc |
107 |
Q |
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| T |
12829525 |
ggttgaaagaaaaagccacaaatttcatgcatatgcaatagtgatgtgtaatgtgcaagacatcaagagcaacacattaactgtggctttgtaggttgtc |
12829624 |
T |
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| Q |
108 |
tctgttctggcacactccattgatgggataaaaccgagaactgtcatgttttggaagaatatgaagggataaaaccgagtatggcgaaggtgaagaacaa |
207 |
Q |
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| T |
12829625 |
tctgttctggcacactccattgatgggataaaaccgagaactgtcatgttttggaagaatatgaagggataaaaccgagtatggcgaaggtgaagaacaa |
12829724 |
T |
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| Q |
208 |
gtatgccaatttaattgtattctcaaccagtattttcagttttttgtgttttaaatatttcattctttaatcaaattgtacttatcatgtagggtaaaag |
307 |
Q |
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| T |
12829725 |
gtatgccaatttaattgtattctcaaccagtattttcaattttttgtgttttaaatatttcattctttaatcaaattgtactaatcatgtagggtaaaag |
12829824 |
T |
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| Q |
308 |
actctgtagtcttttctccaatctttgttaaacatccaaatggcagaaaatacatgtgttagatggaacatct |
380 |
Q |
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| T |
12829825 |
actctctagtcttttctccaatctttgttaaaaatccaaatggtagaaaatacatgtgttagatggatcatct |
12829897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 12824585 - 12824668
Alignment:
| Q |
104 |
tgtctctgttctggcacactccattgatgggataaaaccgagaactgtcatgttttggaagaatatgaagggataaaaccgagt |
187 |
Q |
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| T |
12824585 |
tgtctctgctctttcatactccatggaagggataaagccaagaaatgtcatgttttggaagaatatgaagggataagaccgagt |
12824668 |
T |
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