View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4226-Insertion-24 (Length: 375)
Name: NF4226-Insertion-24
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-24 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 6412592 - 6412217
Alignment:
| Q |
8 |
ttccatccatgtctcttgcgctttccaacatccaaagaaacacatgtcaatcatt-------------actcacaaaagacacatttatctgtgcattgt |
94 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6412592 |
ttccatccatgtctcttgcgctttcctacattcaaagaaacacatgtcaatcattctcatcagtagatactcacaaaagacacatttatctgtgcattgt |
6412493 |
T |
|
| Q |
95 |
acctctctatatatgttgaagtctttgtcaagtagattacactcatttttcaagccccatagctttttcatatagttttcctttcagtattcgctattgt |
194 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6412492 |
acctctctat----gttgaagtctttgtcaagtagattacactcatttttcaagccccatagctttttcacatagttttcctttcagtattcgctattgt |
6412397 |
T |
|
| Q |
195 |
ctatcaactgttccttagcgtagtaatatccaaactttacactgtaaattcggtgggactaaactttgagcttgctatatcttcttgatccaccacctta |
294 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412396 |
ccatcaactgttccttagcgtagtaatatccaaactttacactgtaaattcggtgggactaaactttgagcttgctatatcttcttgatccaccacctta |
6412297 |
T |
|
| Q |
295 |
taaagcggtattgacaaaatactagaagcatccctaacattgaaattttcttcaataaatctcttcctccactctgtccta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6412296 |
taaagcggtattgacaaaatactagaagcatccctaacattgaaattttctt-aataaatctcttcctccactctgtccta |
6412217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 13382218 - 13382297
Alignment:
| Q |
245 |
cggtgggactaaactttgagcttgctatatcttcttgatccaccaccttataaagcggtattgacaaaatactagaagcatcc |
327 |
Q |
| |
|
|||| |||||| | ||||| ||| ||||||||||||||| | ||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
13382218 |
cggtaggactagattttgaacttactatatcttcttgat---catccttataaagcggtattgataaaatattagaggcatcc |
13382297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University