View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-26 (Length: 316)

Name: NF4226-Insertion-26
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-26
NF4226-Insertion-26
[»] chr4 (11 HSPs)
chr4 (6-316)||(46428024-46428334)
chr4 (6-198)||(46027825-46028016)
chr4 (6-153)||(46015825-46015972)
chr4 (196-311)||(46027667-46027788)
chr4 (13-145)||(46303836-46303970)
chr4 (10-84)||(46020784-46020861)
chr4 (31-136)||(46021197-46021304)
chr4 (4-81)||(46020583-46020660)
chr4 (119-153)||(46028345-46028379)
chr4 (246-280)||(46015755-46015789)
chr4 (6-51)||(41074446-41074491)
[»] chr1 (7 HSPs)
chr1 (30-131)||(3804128-3804229)
chr1 (13-114)||(3801754-3801857)
chr1 (119-154)||(3802349-3802384)
chr1 (97-153)||(3803594-3803650)
chr1 (6-101)||(3802232-3802327)
chr1 (7-70)||(50668040-50668103)
chr1 (85-132)||(50669223-50669270)
[»] chr8 (1 HSPs)
chr8 (6-59)||(4522959-4523012)
[»] scaffold0384 (1 HSPs)
scaffold0384 (4-56)||(5754-5806)
[»] scaffold0079 (1 HSPs)
scaffold0079 (4-56)||(7966-8018)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 46428334 - 46428024
Alignment:
Q  6 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428334 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaac 46428235  T
Q  106 atatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctactttttgtttcttaacaacatcattcttgcttgtca 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  46428234 atatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctattttttgtttattaacaacatcattcttgcttgtca 46428135  T
Q  206 tataaggctctcgctctgtggctcctaattcttgtttcttggcaacttcgttcttgtttcttgcacgacaaacatcacgaaactttctctttgtgcttct 305  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46428134 tataaggctctcgctccgtggcccctaattcttgtttcttggcaacttcgttcttgtttcttgcacgacgaacatcacgaaactttctctttgtgcttct 46428035  T
Q  306 tactttctgcc 316  Q
    |||||||||||    
T  46428034 tactttctgcc 46428024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 46028016 - 46027825
Alignment:
Q  6 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaac 105  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  46028016 caaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatcataacagatggacgaagtacatgttaacctaaattaatttaactgcaaagaac 46027918  T
Q  106 atatcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctactttttgtttcttaacaacatcattcttg 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  46027917 atatcaatacaccattacagcattgagtaaaacttactttctcctcttcgcactgtgccccctactttttgtttcttaacaacatcattcttg 46027825  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 46015972 - 46015825
Alignment:
Q  6 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaac 105  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  46015972 caaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgcaaagaac 46015873  T
Q  106 atatcaatataccattacagcattgagtaaaacttactttctcctttt 153  Q
    ||||||||| | ||||||||||||||||||||||||||| ||| ||||    
T  46015872 atatcaatacatcattacagcattgagtaaaacttacttgctcttttt 46015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 46027788 - 46027667
Alignment:
Q  196 ttgcttgtcatataaggctctcgctctgtggctcctaattcttgtttcttggcaacttcgttcttgtttcttgcacgacaaacat------cacgaaact 289  Q
    ||||||||||   ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||      |||||||||    
T  46027788 ttgcttgtcaagcaaggctctcgctctgtggcccctaattcttgtttcttagcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaact 46027689  T
Q  290 ttctctttgtgcttcttacttt 311  Q
    ||||||||||||||||||||||    
T  46027688 ttctctttgtgcttcttacttt 46027667  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 46303836 - 46303970
Alignment:
Q  13 aattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaa-cccaaattaatttaactgcaaagaacatatca 111  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||| |||| ||| | |||||||| |||||  |||||| || ||||||||||| | |    
T  46303836 aattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaaccccaagctaatttcacagcaaagaacatgtta 46303935  T
Q  112 atataccattacagcattg-agtaaaacttacttt 145  Q
    |||   ||| ||| ||||| |||||||||||||||    
T  46303936 atacgacatcacaacattgaagtaaaacttacttt 46303970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 46020861 - 46020784
Alignment:
Q  10 aataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttgg---acgaagtacatgttaacccaa 84  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||   | | |||||||||||||||||    
T  46020861 aataattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 46021304 - 46021197
Alignment:
Q  31 ttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaat--atac--cattacagc 126  Q
    ||||||||||||  | ||||||||||||| |||| | ||| ||||||||| |||||||||||||||||||| || |||| |||  ||||  |||||||||    
T  46021304 ttttaaagtcaa--tctaaatcataacagatggatggagtgcatgttaactcaaattaatttaactgcaaataatatattaattaatacaacattacagc 46021207  T
Q  127 attgagtaaa 136  Q
    ||||||||||    
T  46021206 attgagtaaa 46021197  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 46020660 - 46020583
Alignment:
Q  4 aacaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacc 81  Q
    |||||||| |||||||||||| ||| |||||||| ||| || |||||||||||||| ||||  |||| ||||||||||    
T  46020660 aacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatcataacagatggattaagtgcatgttaacc 46020583  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 46028379 - 46028345
Alignment:
Q  119 attacagcattgagtaaaacttactttctcctttt 153  Q
    |||||||||||||||||||||||||||||||||||    
T  46028379 attacagcattgagtaaaacttactttctcctttt 46028345  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 46015789 - 46015755
Alignment:
Q  246 ggcaacttcgttcttgtttcttgcacgacaaacat 280  Q
    ||||||||||||||||||||||||||||| |||||    
T  46015789 ggcaacttcgttcttgtttcttgcacgacgaacat 46015755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 41074491 - 41074446
Alignment:
Q  6 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 51  Q
    |||||| |||||||||||| ||| |||||||||||||||| |||||    
T  41074491 caaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 3804128 - 3804229
Alignment:
Q  30 gttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcatt 129  Q
    |||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||| || |  ||||||||||||| |||| | ||| ||| ||||    
T  3804128 gttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatcacaacatt 3804227  T
Q  130 ga 131  Q
    ||    
T  3804228 ga 3804229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 3801754 - 3801857
Alignment:
Q  13 aattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgtt--aacccaaattaatttaactgcaaagaacatatc 110  Q
    |||||| ||||| ||| |||||||||||||||| ||||||||||||| |||| ||| | ||||||  | |||||| |||||| |||||||||||| |||     
T  3801754 aattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcactgcaaagaacgtatt 3801853  T
Q  111 aata 114  Q
    ||||    
T  3801854 aata 3801857  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 3802349 - 3802384
Alignment:
Q  119 attacagcattgagtaaaacttactttctccttttc 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  3802349 attacagcattgagtaaaacttactttctccttttc 3802384  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 3803594 - 3803650
Alignment:
Q  97 gcaaagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 153  Q
    ||||||||||||  | || | |||||| |||||||||||||||||||||||||||||    
T  3803594 gcaaagaacatagtattacaacattacggcattgagtaaaacttactttctcctttt 3803650  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 3802232 - 3802327
Alignment:
Q  6 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaa 101  Q
    ||||| |||||||| |||| ||| ||||||||||| |||| ||||||||||||  || | ||| | ||| |||  ||||||||||||||| |||||    
T  3802232 caaaactaattgtagcttcacatggttttaaagtcgaaatctaaatcataacatatgaaagaaatgcatattacgccaaattaatttaaccgcaaa 3802327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 50668103 - 50668040
Alignment:
Q  7 aaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagt 70  Q
    ||||| |||||||||||| ||| ||| |||||||||||| |||||||| |||  ||||||||||    
T  50668103 aaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatatggacgaagt 50668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 50669270 - 50669223
Alignment:
Q  85 attaatttaactgcaaagaacatatcaatataccattacagcattgag 132  Q
    ||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  50669270 attaattcaactgcaaagaacacatcaatagaacattacagcattgag 50669223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 4522959 - 4523012
Alignment:
Q  6 caaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacag 59  Q
    |||||| |||||| ||||| ||| |||||||||||||||| |||||||||||||    
T  4522959 caaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacag 4523012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 5754 - 5806
Alignment:
Q  4 aacaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 56  Q
    |||||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  5754 aacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 5806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7966 - 8018
Alignment:
Q  4 aacaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 56  Q
    |||||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  7966 aacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 8018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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