View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-27 (Length: 293)
Name: NF4226-Insertion-27
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-27 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 26259066 - 26258870
Alignment:
| Q |
8 |
catgatgctccacaaatgagttgctactttgtttctcactagcttatgcaatcatctcttgctcttttttctcttttaatttccttttggtaaaaataaa |
107 |
Q |
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| T |
26259066 |
catgatgctccacaaatgagttgctactttgtttctcactagcttatgcaatcatctcttgctcttttttctcttttaatttccttttggtaaaaataaa |
26258967 |
T |
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| Q |
108 |
gaggggtcattaccactctgcataattgtaattatagacaaggtatatgatgatgggtattcatgagtgccagttatttttctggccatgcaaatat |
204 |
Q |
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| T |
26258966 |
gaggggtcattaccactctgcataattgtaattatagacaaggtatatgatgatgggtattcatgagtgccagttatttttctggccatgcaaatat |
26258870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 26258849 - 26258816
Alignment:
| Q |
225 |
gtatatttttgagatcatgtgtgaaatatttacc |
258 |
Q |
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| T |
26258849 |
gtatatttttgagatcatgtgtgaaatatttacc |
26258816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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