View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-3 (Length: 830)

Name: NF4226-Insertion-3
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-3
NF4226-Insertion-3
[»] chr4 (1 HSPs)
chr4 (8-830)||(22568742-22569571)


Alignment Details
Target: chr4 (Bit Score: 725; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 8 - 830
Target Start/End: Complemental strand, 22569571 - 22568742
Alignment:
Q  8 atatattacaaagggtttactcaagttacacactatctaatatctatcatttcttctcctagtttccatccaagagaccaatatcaccatggaacaacct 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22569571 atatattacaaagggtttactcaagtcacacactatctaatatctatcatttcttctcctagtttccatccaagagaccaatatcaccatggaacaacct 22569472  T
Q  108 gcatcagattctccaacgcagcaacaagaatcaatgcaagactctccttctcccccacaccaacaaccaccatccgactctcttccaccgccacagcaac 207  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22569471 gcaccagattctccaacgcagcaacaagaatcaatgcaagactctccttctcccccacaccaacaaccaccatccgactctcttccactgccacagcaac 22569372  T
Q  208 aaccacgtgactctcctcagcagaaaatacaatctgcacaatactcaccagaataatggctgccgcatccaagagtatccagggaggttcttacattgga 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22569371 aaccacgtgactctcctcagcagaaaatacaatctgcacaaaactcaccagaataatggctgccgcatccaagagtatccagggaggttcttacattgga 22569272  T
Q  308 aatagcttttcaatcgcactcacggctgacatatcgaagggtgtatagggtcctcgtctttatgaggattctcggtcatcatcgccaagaccaacac--- 404  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       
T  22569271 aatagcttttcaatcgcactcacggctgacatatggaagggtgtatagggtcctcgtctttatgaggattctcggtcatcatcaccaagaccaacactcg 22569172  T
Q  405 -----atggaaagtatcattggtaccgtgttttccaacttcgagtattaaagctgattcaaacaagttgtcctgaagaatatctgatcaacattaaaatt 499  Q
         |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22569171 tcttcatggaaagcatcattggtaccgtgttttccaacttcgagtattaaagctgattcaaacaagttgtcctgaagaatatctgatcaacattaaaatt 22569072  T
Q  500 attgaggctattgctgataatacatcaattttaattttggggacaagttgtgttatgattaatctcaatgtttttctctggtagtttcaatgaccttgta 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22569071 attgaggctattgctgataatacatcaattttaattttggggacaagttgtgttatgattaatctcaatgtttttctctggtagtttcaatgaccttgta 22568972  T
Q  600 gtttttcttttatataatgtatgcaggttaattcttgaaatagtttttgttttggatgaaaggcgataccgttggaacttattctctttttatgtgaaat 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22568971 gtttttcttttatataatgtatgcaggttaattcttgaaatagtttttgttttggatgaaaggcgatactgttggaacttattctctttttatgtgaaat 22568872  T
Q  700 attgttggaattttcttcgagaatatataatatatagnnnnnnnataagcaaaaatattaaggggagtacaaggatactttaacccattacaaataaaat 799  Q
    | |||||||||||||||||||||||||||||||||||       ||||||||||||||||| || |||||||||||||||||| | ||||||||||||||    
T  22568871 actgttggaattttcttcgagaatatataatatatagtttttttataagcaaaaatattaa-ggtagtacaaggatactttaatcgattacaaataaaat 22568773  T
Q  800 agtgttaaccacaagacaaactaaggattag 830  Q
    |||||||||||||||||||||||||||||||    
T  22568772 agtgttaaccacaagacaaactaaggattag 22568742  T

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