View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-33 (Length: 257)
Name: NF4226-Insertion-33
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-33 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 33279378 - 33279194
Alignment:
| Q |
7 |
aagactttagtataacctctactctaagctctttttaacttatttcattaagtttcacggataaactttctaaaaattatcttattccacaaccttccat |
106 |
Q |
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| T |
33279378 |
aagactttagtataacctctactctaagctctttttaacttatttcattaagtttcacgggtaaactttctaaaagttatcttattccacaaccttccat |
33279279 |
T |
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| Q |
107 |
ttaacataaccatttattgaacaaacttttaactataaactataacaaagcactcgtagtttaggggcatcattgagctaagtgt |
191 |
Q |
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| T |
33279278 |
ttaacataaccatttattgaacaaactttaaactataaactataacaaagcactcgtagtttaggggcatcattgagctaagtgt |
33279194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 23780247 - 23780103
Alignment:
| Q |
7 |
aagactttagtataacctctactctaagctctttttaacttatttcattaagtttcacggataaactttctaaaaattatcttattccacaaccttccat |
106 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23780247 |
aagactttagtataatctctactctaagctctttttaacttatttcattaagtttcacgggtaaactttctaaaaattatcttattccacaaccttccat |
23780148 |
T |
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| Q |
107 |
ttaacataaccatttattgaacaaacttttaactataaactataa |
151 |
Q |
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| T |
23780147 |
ttaacataaccatttattgagcaaacttttaactataaactataa |
23780103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 23779801 - 23779731
Alignment:
| Q |
187 |
agtgttctgtggtagttggtttaaaaggtactcataggctttcaaaatgggcattggattaattgattgag |
257 |
Q |
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| T |
23779801 |
agtgttctgtggtagttggtttaaaaggtactcataggctttcaaaatgggcattggattaattgattgag |
23779731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 23756116 - 23756079
Alignment:
| Q |
154 |
aagcactcgtagtttaggggcatcattgagctaagtgt |
191 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| |
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| T |
23756116 |
aagcactcctagtttaggggtatcattgagctaagtgt |
23756079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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