View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-34 (Length: 249)
Name: NF4226-Insertion-34
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-34 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 25359143 - 25358926
Alignment:
| Q |
25 |
agctccaatacattgatcacacgtcacatatcctaatgacatcatgatgattttaggcttcaaagtaccaacctctagacttacacatatacttagctca |
124 |
Q |
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| T |
25359143 |
agctccaatacattgatcacacgtcacatatccta-tgacatcataatgattttaggcttcaaagtaccaacctctagacttacacatatacttagctca |
25359045 |
T |
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| Q |
125 |
gaagttagacaattccattttaaagtttggaactccacaactagaaagtataaacaaacacttaactcattaccttaaatactatgaaataccaacataa |
224 |
Q |
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| T |
25359044 |
gaagttagacaattccattttaaagtttggaactccacaactagaaagtata----aacacttaactcattaccttaaatactatgaaataccaacataa |
25358949 |
T |
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| Q |
225 |
ccagtttaccaccctcataccat |
247 |
Q |
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|||||||||||||||||||||| |
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| T |
25358948 |
tcagtttaccaccctcataccat |
25358926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 25354570 - 25354434
Alignment:
| Q |
52 |
atatcctaatgacatcatgatgattttaggcttcaaagtaccaacctctagacttacac---atatactta-------gctcagaagttagacaattcca |
141 |
Q |
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| T |
25354570 |
atatcctcatgacatcatgacgattttaggctacaaaataccaacct-tagacttacacataatatactcactcagggggttagaagctagacaatt-ca |
25354473 |
T |
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| Q |
142 |
ttttaaagtttggaactccacaactagaaagtataaaca |
180 |
Q |
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| T |
25354472 |
ctttcaagtttggaactccacaactagaaagtagaaaca |
25354434 |
T |
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