View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-4 (Length: 827)

Name: NF4226-Insertion-4
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-4
NF4226-Insertion-4
[»] chr5 (7 HSPs)
chr5 (196-827)||(8146343-8146961)
chr5 (8-196)||(8147467-8147655)
chr5 (297-437)||(6686391-6686533)
chr5 (297-437)||(43589975-43590116)
chr5 (307-437)||(11261907-11262038)
chr5 (297-417)||(30893263-30893384)
chr5 (612-678)||(4715704-4715770)
[»] chr4 (5 HSPs)
chr4 (305-444)||(17799148-17799288)
chr4 (305-444)||(38140726-38140866)
chr4 (297-437)||(4058720-4058861)
chr4 (297-437)||(47867884-47868025)
chr4 (358-437)||(24940370-24940449)
[»] chr1 (12 HSPs)
chr1 (297-444)||(42724094-42724242)
chr1 (297-444)||(7190656-7190804)
chr1 (633-701)||(51316415-51316483)
chr1 (370-444)||(33081067-33081139)
chr1 (297-437)||(24190477-24190617)
chr1 (297-437)||(2126045-2126186)
chr1 (358-437)||(16854147-16854226)
chr1 (358-437)||(28916593-28916672)
chr1 (358-437)||(41063748-41063827)
chr1 (367-438)||(52841529-52841600)
chr1 (367-440)||(23392250-23392322)
chr1 (358-403)||(32318635-32318680)
[»] chr2 (7 HSPs)
chr2 (305-437)||(45660372-45660505)
chr2 (615-680)||(9517264-9517329)
chr2 (297-437)||(35517130-35517271)
chr2 (309-432)||(14873975-14874099)
chr2 (358-437)||(3201333-3201412)
chr2 (358-437)||(41528263-41528342)
chr2 (358-436)||(33198705-33198783)
[»] chr7 (13 HSPs)
chr7 (297-440)||(19912781-19912925)
chr7 (297-437)||(38260323-38260464)
chr7 (297-437)||(6191052-6191193)
chr7 (297-437)||(45485962-45486103)
chr7 (297-437)||(46760269-46760410)
chr7 (394-444)||(37767129-37767179)
chr7 (297-437)||(14805877-14806017)
chr7 (297-437)||(15252871-15253011)
chr7 (297-437)||(35923259-35923399)
chr7 (386-437)||(21654182-21654233)
chr7 (358-437)||(25737701-25737780)
chr7 (386-437)||(41890303-41890354)
chr7 (358-440)||(22632093-22632175)
[»] chr3 (9 HSPs)
chr3 (358-417)||(3084214-3084273)
chr3 (307-437)||(6438094-6438225)
chr3 (358-417)||(45868540-45868599)
chr3 (358-437)||(51426623-51426702)
chr3 (358-422)||(31292632-31292695)
chr3 (297-437)||(35963163-35963304)
chr3 (315-437)||(31126216-31126339)
chr3 (367-440)||(46557244-46557317)
chr3 (370-419)||(48343899-48343948)
[»] scaffold0300 (1 HSPs)
scaffold0300 (297-437)||(586-727)
[»] chr8 (4 HSPs)
chr8 (297-437)||(7022417-7022558)
chr8 (297-437)||(43216361-43216502)
chr8 (308-437)||(8711882-8712011)
chr8 (608-677)||(22188196-22188265)
[»] chr6 (3 HSPs)
chr6 (297-437)||(11082258-11082399)
chr6 (367-437)||(35129139-35129209)
chr6 (358-440)||(7274950-7275032)
[»] scaffold0182 (1 HSPs)
scaffold0182 (370-419)||(21959-22008)
[»] scaffold0774 (1 HSPs)
scaffold0774 (307-436)||(3451-3581)
[»] scaffold0010 (1 HSPs)
scaffold0010 (317-415)||(160952-161051)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-176; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 196 - 827
Target Start/End: Complemental strand, 8146961 - 8146343
Alignment:
Q  196 atgtaatcactttatttgtattgactattgaaagtggtttggggcagagagacaattccagttttgtttatatcactttatcattaaatgcaccaccgtc 295  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||        
T  8146961 atgtaatcactttatttgtattgattattgaaagtggtttggggcagagagacagttccagttttgtttatatcactttatcattaaatgcgccac---- 8146866  T
Q  296 gaaaacattataatttggagtatagtttcttgtgttcttctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
          |||||||||||||||||||||||||||||||||||| ||||||||||||       | ||||||||||||||||||||||||||||||||||||    
T  8146865 ------attataatttggagtatagtttcttgtgttcttctggaataagttttatggaaaaatttaaaataaattttcattggttatctgttatggagaa 8146772  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaatttcattttgnnnnnnnntgnnnnnnnnngaaataacatgattaaatatgttattggttta 495  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||        ||         ||||||||||||||||||||||||||||||||    
T  8146771 aatgagagggagagcaaattaattgtaatttgcatttaatttcattttgaaaaaaa-tgattttttt-gaaataacatgattaaatatgttattggttta 8146674  T
Q  496 taatttggaaccnnnnnnnntgagnnnnnnnnnn-gtaatttaggacggagggagcacgtaattagcataagagaaccaaacaattggacctatgtggtt 594  Q
    |||||||| ||         ||||           ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  8146673 taatttgggac-aaaaaaaatgagtttttttgtttgtaatttaggacggagggagcacataattagcataaaagaaccaaacaattggacctacgtggtt 8146575  T
Q  595 aattaacttcaccaatgataaattgtttaggagaatatgagttagattttttgatggaataattattgatcagattttacttacctcctgaccgaacatc 694  Q
    ||||||||||||||||||  |||| || ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |||||||     
T  8146574 aattaacttcaccaatgacgaattattcaggagaatatgagttagatttcttaatggaataattattggtcagattttacttacctcctgatcgaacatt 8146475  T
Q  695 agattaccaaaacttctttctcttgaaaaccaaatgattaatatcgaaagaaaatatatcaccacaaataccaagtcatatataaatgagtattttatac 794  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||     
T  8146474 agattaccaatacttctttctcttgaaaaccaaataattaatatcgaaag-aaatatatcagcacaattaccaagtcatatataaatgagtattttatat 8146376  T
Q  795 acttaaacnnnnnnnnacccatgtactgtaatt 827  Q
    ||||||||        |||||||||||||||||    
T  8146375 acttaaacttttttttacccatgtactgtaatt 8146343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 8147655 - 8147467
Alignment:
Q  8 taaaattctagtgtgaaagcatggatcttttattaatttttagtttaagagtcatgtctcatgctcatgattttctatgtgttcactgtaatatgaaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  8147655 taaaattctagtgtgaaagcatggatcttttattaatttttagtttaagagtcatgtttcatgctcatgattttctatgttttcactgtaatatgaaatt 8147556  T
Q  108 cttgactacaacgatgtacatataacctcataagatttagtttatgtagatgaattgaaatcaaatttggtactctagaaattacaaca 196  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8147555 cttgactacaacgatatacatataacctcataagatttagtttatgtagatgaattgaaatcaaatttggtactccagaaattacaaca 8147467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 6686533 - 6686391
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgtt--cttctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggaga 394  Q
    ||||||| | ||||||||||||||||| |||||||  |||  |||| |||||||||       |||||||  |||||||||||| |||  |||||||| |    
T  6686533 aaaacataagaatttggagtatagttttttgtgttttctttggaaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaa 6686434  T
Q  395 aaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||| || ||||  ||||| | |||||||||||||||||||    
T  6686433 aaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 6686391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 43589975 - 43590116
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgtt--cttctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggaga 394  Q
    ||||||| | ||||||||||||||||| |||||||  ||| ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| |    
T  43589975 aaaacataagaatttggagtatagttttttgtgttttcttttgaaa-aagttttatagggagatgtaaaaacaattttcattggctattggttatggaaa 43590073  T
Q  395 aaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||| || ||||  ||||| | |||||||||||||||||||    
T  43590074 aaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 43590116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 11261907 - 11262038
Alignment:
Q  307 aatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagagga 405  Q
    ||||||||||||| ||| ||||||| | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||||||| || |    
T  11261907 aatttggagtataattttttgtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaa 11262006  T
Q  406 agaacaaattaattgtaatttgcatttaattt 437  Q
    |||  ||||| | |||||||||||||||||||    
T  11262007 agagaaaattgaatgtaatttgcatttaattt 11262038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 30893263 - 30893384
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttcttctga-aataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| ||||||||||||||||||||||||||| |||| | ||| | ||||||       |||||||  |||||| ||||||||| |||||| || ||    
T  30893263 aaaacatgataatttggagtatagtttcttgtgtttttcttagaattaattttatggaaagatgtaaaaataatttttattggttatttgttatagataa 30893362  T
Q  396 aatgagaggaagaacaaattaa 417  Q
    ||| ||||| |||  |||||||    
T  30893363 aatcagagggagaggaaattaa 30893384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 678
Target Start/End: Original strand, 4715704 - 4715770
Alignment:
Q  612 ataaattgtttaggagaatatgagttagattttttgatggaataattattgatcagattttacttac 678  Q
    ||||||| ||| ||||||| | |||| |||||||||||| ||||||| || |||||| |||||||||    
T  4715704 ataaattattttggagaatttaagtttgattttttgatgaaataattcttaatcagactttacttac 4715770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 305 - 444
Target Start/End: Original strand, 17799148 - 17799288
Alignment:
Q  305 ataatttggagtatagtttcttgtgttcttct-gaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagag 403  Q
    ||||||||||||||| ||||| |||||||||| | ||| ||||||||       |||||||  |||||||||||||||| ||||||||||||||||||||    
T  17799148 ataatttggagtataatttctggtgttcttcttggaattagttttatgggaagatgtaaaaacaattttcattggttatttgttatggagaaaatgagag 17799247  T
Q  404 gaagaacaaattaattgtaatttgcatttaatttcattttg 444  Q
    | |||||||||||| || |||||||||||| ||||| ||||    
T  17799248 ggagaacaaattaaatgcaatttgcatttagtttcactttg 17799288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 444
Target Start/End: Original strand, 38140726 - 38140866
Alignment:
Q  305 ataatttggagtatagtttcttgtgttcttctg-aaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagag 403  Q
    ||||||| ||||||||||||||||||||| ||  |||| ||||| ||       |||||||||||||||||||| |||| ||||||||  |||||| |||    
T  38140726 ataattttgagtatagtttcttgtgttctactttaaattagtttcatcagaaggtgtaaaataaattttcattgattatttgttatggcaaaaatgtgag 38140825  T
Q  404 gaagaacaaattaattgtaatttgcatttaatttcattttg 444  Q
    | |||||||| ||| || ||||| |||||||||||||||||    
T  38140826 ggagaacaaactaaatgcaattttcatttaatttcattttg 38140866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 4058861 - 4058720
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | ||||| |||||||||       |||||||  ||||||||||||||||  |||||||| ||    
T  4058861 aaaacataagaatttggagtatagttttttgtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcattggttattggttatggaaaa 4058762  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| ||  |||  ||||| | || ||||||||||||||||    
T  4058761 aatgaaagagagagaaaattgaatgaaatttgcatttaattt 4058720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 47868025 - 47867884
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  47868025 aaaacataagaatttggagtatagttttttgtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaa 47867926  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  47867925 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 47867884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 24940449 - 24940370
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  ||||||| ||||||||  |||||||||||||||| ||  |||  ||||||| |||||||| ||||||||||    
T  24940449 tgtaaaaacaattttcgttggttattggttatggagaaaatgaaagagagagaaaattaaatgtaatttccatttaattt 24940370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 297 - 444
Target Start/End: Complemental strand, 42724242 - 42724094
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttcttct-gaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    |||||||||| ||||| ||||||||||||| ||||||||| ||||| ||||| |        |||||||  |||||| ||| ||||| ||||||| ||||    
T  42724242 aaaacattatcatttgaagtatagtttcttctgttcttcttgaaattagtttcacgagaagatgtaaaaacaatttttattagttatttgttatgaagaa 42724143  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaatttcattttg 444  Q
    ||||| ||| ||| |||||||| || |||||||||||||||||| ||||    
T  42724142 aatgatagggagagcaaattaaatgcaatttgcatttaatttcactttg 42724094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 297 - 444
Target Start/End: Complemental strand, 7190804 - 7190656
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttcttct-gaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| ||||||| ||||||||||||||||||||| || ||||| ||||  ||       |||||||  |||||  ||| ||||| |||||| |||||    
T  7190804 aaaacatgataatttagagtatagtttcttgtgttctccttgaaattagttcaatgaaaagatgtaaaaataatttatattagttatttgttatagagaa 7190705  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaatttcattttg 444  Q
    ||||||||| ||| ||||||||  | |||||||||||||||||| ||||    
T  7190704 aatgagagggagagcaaattaaaggcaatttgcatttaatttcactttg 7190656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 633 - 701
Target Start/End: Original strand, 51316415 - 51316483
Alignment:
Q  633 gagttagattttttgatggaataattattgatcagattttacttacctcctgaccgaacatcagattac 701  Q
    ||||| ||||||||| ||||| |||| ||  |||||||||||||||||||||||||||| |||||||||    
T  51316415 gagtttgattttttggtggaacaattcttagtcagattttacttacctcctgaccgaacttcagattac 51316483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 33081139 - 33081067
Alignment:
Q  370 tttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatttcattttg 444  Q
    |||||||| |||| |||| | |||||||||||||| |||||||||||||  ||||||||||||||||||| ||||    
T  33081139 tttcattgattatttgttttagagaaaatgagagggagaacaaattaat--taatttgcatttaatttcactttg 33081067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 24190617 - 24190477
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  24190617 aaaacataagaatttggagtatagttttttgtgttttctttggaaaaagttttatacggagatgtaaaaacaattttcattggctattggttatggaaaa 24190518  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||||| |||||||||||||||||||    
T  24190517 aatgaaagaaagagaaaattaa-tgtaatttgcatttaattt 24190477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 2126186 - 2126045
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | |||||||| |||||||| ||||||| | | || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  2126186 aaaacataagaatttggaatatagttttttgtgttttctttggaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaa 2126087  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  2126086 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 2126045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 16854226 - 16854147
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||| ||||| |||  |||||||||||||||| ||  |||  ||||||| |||||||||||||||||||    
T  16854226 tgtaaaaacaatttttattggctattggttatggagaaaatgaaagagagataaaattaaatgtaatttgcatttaattt 16854147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 28916593 - 28916672
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||||||||||||    ||||||||||||| | | |||||||||||| | || ||||||||||||||||    
T  28916593 tgtaaaaataattttcattggttaaaaattatggagaaaataaaaagaagaacaaattgaatgcaatttgcatttaattt 28916672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 41063827 - 41063748
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||||||||||||| |||||| |||||||| | ||  |||||||||| | || | ||||||||||||||    
T  41063827 tgtaaaaataattttcattggttatttgttattgagaaaatcaaagagagaacaaattgaatgcactttgcatttaattt 41063748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 52841529 - 52841600
Alignment:
Q  367 aattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatttc 438  Q
    ||||||||||||||||  ||||| | |||||||| ||||||| |||| | |||| |||||||| ||||||||    
T  52841529 aattttcattggttattagttatagggaaaatgaaaggaagagcaaaatgattgcaatttgcacttaatttc 52841600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 23392250 - 23392322
Alignment:
Q  367 aattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatttcat 440  Q
    |||||||||||  |||  |||||||||||||||  || ||||  |||||||| |||||||||||||||||||||    
T  23392250 aattttcattgactattggttatggagaaaatggaagaaagagaaaattaat-gtaatttgcatttaatttcat 23392322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 32318635 - 32318680
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagag 403  Q
    |||||||  ||||||||||||||||  |||||||||||||||||||    
T  32318635 tgtaaaaacaattttcattggttattggttatggagaaaatgagag 32318680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 305 - 437
Target Start/End: Complemental strand, 45660505 - 45660372
Alignment:
Q  305 ataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagag 403  Q
    ||||||||||||||||||| ||||||| | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||||||||||| ||    
T  45660505 ataatttggagtatagttttttgtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggagaaaatgaaag 45660406  T
Q  404 gaagaacaaattaattgtaatttgcatttaattt 437  Q
      |||  ||||||| |||||||||||||||||||    
T  45660405 agagataaaattaaatgtaatttgcatttaattt 45660372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 680
Target Start/End: Complemental strand, 9517329 - 9517264
Alignment:
Q  615 aattgtttaggagaatatgagttagattttttgatggaataattattgatcagattttacttacct 680  Q
    |||||||||||||||  |||||| |||||||  ||| ||||||||||||||| |||||||||||||    
T  9517329 aattgtttaggagaacttgagtttgatttttgtatgaaataattattgatcaaattttacttacct 9517264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 35517271 - 35517130
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  35517271 aaaacataagaatttggagtatagttttttgtgttttctttggaaaaagttttatagtgagatgtaaaaataattttcattggctattggttatggaaaa 35517172  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  35517171 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 35517130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 14874099 - 14873975
Alignment:
Q  309 tttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagaggaag 407  Q
    ||||||||||||||| ||||||| | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||||||||||| ||  ||    
T  14874099 tttggagtatagttttttgtgttttctttgaaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggagaaaatgaaagagag 14874000  T
Q  408 aacaaattaattgtaatttgcattt 432  Q
    |  ||||||| ||||||||||||||    
T  14873999 ataaaattaaatgtaatttgcattt 14873975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 3201412 - 3201333
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||||||||| |||  |||||||| ||||||| || ||||  ||||| | |||||||||||||||||||    
T  3201412 tgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagataaaattgaatgtaatttgcatttaattt 3201333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 41528342 - 41528263
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||||||||| |||  |||||||| ||||||| || ||||  ||||| | |||||||||||||||||||    
T  41528342 tgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 41528263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 33198705 - 33198783
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatt 436  Q
    |||||||  |||||| |||||||||  |||||||||||||||| ||  |||  ||||| | ||||||||||||||||||    
T  33198705 tgtaaaaacaattttgattggttattggttatggagaaaatgaaagagagagaaaattgaatgtaatttgcatttaatt 33198783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 19912781 - 19912925
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       |||||||  ||||||||||||||||  |||||||| ||    
T  19912781 aaaacataagaatttggagtatagttttttgtgttttctttggaaaaagttttatagtaaaatgtaaaaacaattttcattggttattggttatggaaaa 19912880  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaatttcat 440  Q
    ||||| || ||||  ||||| | ||||||||||||||||||||||    
T  19912881 aatgaaagaaagagaaaattgaatgtaatttgcatttaatttcat 19912925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 38260464 - 38260323
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttcttct-gaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    |||||||| || |||| | |||||||| ||||||| |||| ||||||||||||||       |||||||  |||||||||||||||| | |||| |||||    
T  38260464 aaaacattgtagtttgtaatatagttttttgtgttattcttgaaataagttttatagaaagttgtaaaaataattttcattggttatttattattgagaa 38260365  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| ||  ||| |||||||| || | ||||||||||||||    
T  38260364 aatgaaagagagagcaaattaaatgcactttgcatttaattt 38260323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 6191193 - 6191052
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | | ||| |||||||||       |||||||  |||||||||||| |||  |||||||||||    
T  6191193 aaaacataagaatttggagtatagttttttgtgttttcttttaaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggagaa 6191094  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| ||  |||  ||||||| |||||||| ||||||||||    
T  6191093 aatgaaagagagataaaattaaatgtaattttcatttaattt 6191052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 45486103 - 45485962
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  45486103 aaaacataaaaatttggagtatagttttttgtgttttctttggaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggaaaa 45486004  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  45486003 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 45485962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 46760269 - 46760410
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  46760269 aaaacataagaatttggagtatagttttttgtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaa 46760368  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  | ||| | |||||||||||||||||||    
T  46760369 aatgaaagaaagagaatattgaatgtaatttgcatttaattt 46760410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 37767129 - 37767179
Alignment:
Q  394 aaaatgagaggaagaacaaattaattgtaatttgcatttaatttcattttg 444  Q
    ||||||||||| |||||||||||| || |||||||| ||||||||||||||    
T  37767129 aaaatgagagggagaacaaattaaatgcaatttgcacttaatttcattttg 37767179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 14806017 - 14805877
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| |||| || | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  14806017 aaaacataagaatttggagtatagttttttgtattttctttgaaa-aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaa 14805919  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  14805918 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 14805877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 15253011 - 15252871
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| |||| || | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  15253011 aaaacataagaatttggagtatagttttttgtattttctttgaaa-aagttttataggaagatgtaaaaacaattttcattggctattggttatggaaaa 15252913  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  15252912 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 15252871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 35923399 - 35923259
Alignment:
Q  297 aaaacattataatttggagtatagtttct-tgtgttcttctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| | ||| |||||  |||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  35923399 aaaacataaaaatttggagtatagtttttgtgttttctttggaaa-aagttttatagaaagatgtaaaaacaattttcattggctattggttatggaaaa 35923301  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  35923300 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 35923259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 21654182 - 21654233
Alignment:
Q  386 ttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||||||||||||| | | |||||||||| | |||||||||||||||||||    
T  21654182 ttatggagaaaatgaaaaggagaacaaattgaatgtaatttgcatttaattt 21654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 25737701 - 25737780
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||||||||| |||  |||||||| ||||||| || ||||  ||||| | |||||||||||||||||||    
T  25737701 tgtaaaaacaattttcattggctattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 25737780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 41890303 - 41890354
Alignment:
Q  386 ttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||||||||||| | | |||||||||||| | |||||||||||||||||||    
T  41890303 ttatggagaaaataaaaagaagaacaaattgaatgtaatttgcatttaattt 41890354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 22632175 - 22632093
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatttcat 440  Q
    |||||||  |||||||||||| |||  |||||||| ||||||  ||  |||  ||||||| ||||||||||||||||||||||    
T  22632175 tgtaaaaacaattttcattggatattggttatggaaaaaatggaagagagagaaaattaaatgtaatttgcatttaatttcat 22632093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 3084214 - 3084273
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaa 417  Q
    |||||||  ||| |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  3084214 tgtaaaaacaatattcattggttatttgttatggagaaaatgagaggaaaaacaaattaa 3084273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 437
Target Start/End: Complemental strand, 6438225 - 6438094
Alignment:
Q  307 aatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagagga 405  Q
    ||||||||||||||||| ||||||| | | ||||| ||| |||||       |||||||  |||||||||||| |||  |||||||||||||||| ||      
T  6438225 aatttggagtatagttttttgtgttttctttgaaaaaagctttataggaagatgtaaaaacaattttcattggctattggttatggagaaaatgaaagag 6438126  T
Q  406 agaacaaattaattgtaatttgcatttaattt 437  Q
    |||  ||||||| |||||||||||||||||||    
T  6438125 agataaaattaaatgtaatttgcatttaattt 6438094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 45868540 - 45868599
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaa 417  Q
    |||||||  |||||||||||||||| ||||| ||||||||||||||||| | ||||||||    
T  45868540 tgtaaaaacaattttcattggttatttgttacggagaaaatgagaggaatagcaaattaa 45868599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 51426702 - 51426623
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    |||||||  |||||||||||||||    ||||||||||||| | | |||||||||||| | |||||||||||||||||||    
T  51426702 tgtaaaaataattttcattggttaaaaattatggagaaaataaaaagaagaacaaattgaatgtaatttgcatttaattt 51426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 31292695 - 31292632
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgta 422  Q
    |||||||  |||||||||||||||| ||||||  ||||||||||||| |||||||||||| ||||    
T  31292695 tgtaaaaacaattttcattggttatttgttataaagaaaatgagagg-agaacaaattaaatgta 31292632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 35963304 - 35963163
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       || ||||  |||||| |||||||||  |||||||||||    
T  35963304 aaaacataagaatttggagtatagttttttgtgttttgtttggaaaaagttttataggaagatggaaaaacaatttttattggttattggttatggagaa 35963205  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| ||  |||  ||||||| || ||||||||||||||||    
T  35963204 aatgaaagagagagaaaattaaatgcaatttgcatttaattt 35963163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 437
Target Start/End: Complemental strand, 31126339 - 31126216
Alignment:
Q  315 gtatagtttcttgtgttcttct-gaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaa 413  Q
    ||||| ||| ||||||||| || ||||||||||||||       |||||||  |||||||||||||||    ||||||||||||| | | | ||||||||    
T  31126339 gtataattttttgtgttctccttgaaataagttttatggaaagatgtaaaaataattttcattggttaaaaattatggagaaaataaaaaggagaacaaa 31126240  T
Q  414 ttaattgtaatttgcatttaattt 437  Q
    || | || ||||||||||||||||    
T  31126239 ttgaatgcaatttgcatttaattt 31126216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 46557244 - 46557317
Alignment:
Q  367 aattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatttcat 440  Q
    |||||||||||| |||  |||||||| ||||||| ||  |||  ||||||| |||||||| |||||||||||||    
T  46557244 aattttcattggctattagttatggaaaaaatgaaagagagagaaaattaaatgtaatttacatttaatttcat 46557317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 48343899 - 48343948
Alignment:
Q  370 tttcattggttatctgttatggagaaaatgagaggaagaacaaattaatt 419  Q
    ||||||||  ||| ||||| ||||||||||||||||| ||||||||||||    
T  48343899 tttcattgactatgtgttacggagaaaatgagaggaataacaaattaatt 48343948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 586 - 727
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | |||||||||||||||||  |||||| | | ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  586 aaaacataagaatttggagtatagttttatgtgttttctttgaaaaaagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaa 685  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  686 aatgaaagaaagataaaattgaatgtaatttgcatttaattt 727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 7022417 - 7022558
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | ||||| |||||||||       | |||||  |||||||||||| |||  |||||||| ||    
T  7022417 aaaacataaaaatttggagtatagttttttgtgttttctttgaaaaaagttttataggaagatataaaaataattttcattggctattggttatggaaaa 7022516  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  7022517 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 7022558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 43216361 - 43216502
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | ||||| |||||||||       |||||||  ||||||||||   |||  |||||||||||    
T  43216361 aaaacataagaatttggagtatagttttttgtgttttctttgaaaaaagttttataggaagatgtaaaaacaattttcattcactattggttatggagaa 43216460  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| ||  |||  ||||||| |||||||||||||||||||    
T  43216461 aatgaaagagagataaaattaaatgtaatttgcatttaattt 43216502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 308 - 437
Target Start/End: Complemental strand, 8712011 - 8711882
Alignment:
Q  308 atttggagtatagtttcttgtgttcttctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagaggaag 407  Q
    |||||||||||||||| ||||||| || || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||||| | ||  ||    
T  8712011 atttggagtatagttttttgtgtttttttggaaaaagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaattaaagagag 8711912  T
Q  408 aacaaattaattgtaatttgcatttaattt 437  Q
    |  ||||| | |||||||||||||||||||    
T  8711911 agaaaattgaatgtaatttgcatttaattt 8711882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 22188265 - 22188196
Alignment:
Q  608 aatgataaattgtttaggagaatatgagttagattttttgatggaataattattgatcagattttactta 677  Q
    ||||| |||||||| ||||||||||||||| ||||||   || ||| |||| ||||||||| ||||||||    
T  22188265 aatgacaaattgttcaggagaatatgagtttgattttcaaattgaacaattcttgatcagaatttactta 22188196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 11082258 - 11082399
Alignment:
Q  297 aaaacattataatttggagtatagtttcttgtgttct-tctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaa 395  Q
    ||||||| | ||||||||||||||||| ||||||| | | || || |||||||||       |||||||  |||||||||||| |||  |||||||| ||    
T  11082258 aaaacataagaatttggagtatagttttttgtgttttctttggaaaaagttttatagggagatgtaaaaacaattttcattggctattggttatggaaaa 11082357  T
Q  396 aatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||| || ||||  ||||| | |||||||||||||||||||    
T  11082358 aatgaaagaaagagaaaattgaatgtaatttgcatttaattt 11082399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 35129139 - 35129209
Alignment:
Q  367 aattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaattt 437  Q
    ||||||||||||||||  |||||||| ||||||| || ||||  ||||| | |||||||||||||||||||    
T  35129139 aattttcattggttattggttatggaaaaaatgaaagaaagagaaaattgaatgtaatttgcatttaattt 35129209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 440
Target Start/End: Original strand, 7274950 - 7275032
Alignment:
Q  358 tgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaattaattgtaatttgcatttaatttcat 440  Q
    |||||||  |||||||||||| |||  |||||||| ||||||| ||  |||  ||||||| ||||||||| ||||||||||||    
T  7274950 tgtaaaaacaattttcattggctattggttatggaaaaaatgaaagagagagaaaattaaatgtaatttgtatttaatttcat 7275032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 22008 - 21959
Alignment:
Q  370 tttcattggttatctgttatggagaaaatgagaggaagaacaaattaatt 419  Q
    |||||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  22008 tttcattgattatttgttatggagaaaatgagaggaagaaacaattaatt 21959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 436
Target Start/End: Original strand, 3451 - 3581
Alignment:
Q  307 aatttggagtatagtttcttgtgtt--cttctgaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagagg 404  Q
    ||||||||||||||||| |||||||  ||| ||||| |||||||||       |||||||  |||||||||||| |||  |||||||| ||||||| ||     
T  3451 aatttggagtatagttttttgtgttttcttttgaaa-aagttttataggaagatgtaaaaataattttcattggctattggttatggaaaaaatgaaaga 3549  T
Q  405 aagaacaaattaattgtaatttgcatttaatt 436  Q
     |||  ||||| | ||||||||||||||||||    
T  3550 gagagaaaattgaatgtaatttgcatttaatt 3581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 317 - 415
Target Start/End: Original strand, 160952 - 161051
Alignment:
Q  317 atagtttcttgtgttcttct-gaaataagttttatnnnnnnntgtaaaataaattttcattggttatctgttatggagaaaatgagaggaagaacaaatt 415  Q
    ||||||||||||||| | || ||||||||||| ||       |||||||  |||||||||||||||| |||||| |||||||||| || |||| ||||||    
T  160952 atagtttcttgtgttatccttgaaataagtttgatagaaagttgtaaaaacaattttcattggttatttgttattgagaaaatgaaagaaagagcaaatt 161051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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