View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-40 (Length: 196)

Name: NF4226-Insertion-40
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-40
NF4226-Insertion-40
[»] chr3 (29 HSPs)
chr3 (8-196)||(10527823-10528011)
chr3 (8-196)||(9839326-9839514)
chr3 (8-196)||(9850204-9850392)
chr3 (8-196)||(10261163-10261351)
chr3 (8-196)||(10672147-10672335)
chr3 (8-196)||(10196138-10196326)
chr3 (8-196)||(10032468-10032656)
chr3 (8-196)||(10089255-10089443)
chr3 (8-196)||(10127393-10127581)
chr3 (8-196)||(10363214-10363402)
chr3 (8-196)||(10663991-10664179)
chr3 (8-196)||(10433460-10433648)
chr3 (8-196)||(11769699-11769887)
chr3 (8-196)||(10375261-10375449)
chr3 (8-196)||(10077734-10077922)
chr3 (8-196)||(10184707-10184895)
chr3 (8-196)||(10581066-10581263)
chr3 (29-192)||(10517971-10518134)
chr3 (13-195)||(13171501-13171683)
chr3 (17-192)||(11781402-11781577)
chr3 (13-195)||(13344559-13344741)
chr3 (13-195)||(13333374-13333556)
chr3 (111-195)||(13290233-13290317)
chr3 (111-195)||(13161548-13161632)
chr3 (83-193)||(8861826-8861936)
chr3 (83-193)||(11159436-11159546)
chr3 (96-193)||(10889859-10889956)
chr3 (83-195)||(10501114-10501226)
chr3 (83-193)||(11148273-11148383)
[»] chr2 (1 HSPs)
chr2 (8-196)||(26907362-26907550)
[»] scaffold0083 (1 HSPs)
scaffold0083 (8-196)||(57827-58024)
[»] scaffold0002 (3 HSPs)
scaffold0002 (13-195)||(135305-135487)
scaffold0002 (13-195)||(145356-145538)
scaffold0002 (13-195)||(153661-153843)
[»] chr8 (2 HSPs)
chr8 (17-192)||(44957109-44957284)
chr8 (83-192)||(11485578-11485687)
[»] chr7 (1 HSPs)
chr7 (111-192)||(29837208-29837289)
[»] chr4 (1 HSPs)
chr4 (79-196)||(17852339-17852456)
[»] chr6 (1 HSPs)
chr6 (8-192)||(31679153-31679337)
[»] chr1 (1 HSPs)
chr1 (98-192)||(826457-826551)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10527823 - 10528011
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  10527823 gcaagaaagtatggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaacagca 10527922  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  10527923 acgtatggaacttatcaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctctcatttgaaaagatgttttgca 10528011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 9839326 - 9839514
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||     
T  9839326 gcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataagtgagtggacttcaattttgaacagcg 9839425  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||    
T  9839426 acatatggaacttatcaaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcatttgaaaagatgctttgca 9839514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 9850204 - 9850392
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||      
T  9850204 gcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataagtgagtggacttcaattttgaacagtg 9850303  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||    
T  9850304 acatatggaacttatcaaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcatttgaaaagatgctttgca 9850392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10261163 - 10261351
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| | |||||| | |||||||||||||||||||  ||||||||||  ||||||||||||||||||||||||     
T  10261163 gcaagaaagtgtggaggattgccaatagctgccaaaacacttggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaacagcg 10261262  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  10261263 acatatggaacttatcaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctctcatttgaaaagatgttttgca 10261351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10672147 - 10672335
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  10672147 gcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataactgagtggacttcaattttgaacagca 10672246  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || |||| |||||   |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  10672247 acatatgaaacttgcgaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctctcatttgaaaagatgttttgca 10672335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10196138 - 10196326
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    ||||| |||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||  ||||| ||||  ||||||||||||||||||||||||     
T  10196138 gcaaggaagtgtggaggattgccaatagctgctaaaacactaggaggacttctacgttcaaaggtagaaataacagagtggacttcaattttgaacagcg 10196237  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||| ||||||||||||||||||    
T  10196238 acatatggaacttatcaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctgtcatttgaaaagatgttttgca 10196326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10032468 - 10032656
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| | |||||| | ||||| |||||||||||||  ||||||||||  ||||||||||||||||||||||||     
T  10032468 gcaagaaagtgtggaggattgccaatagctgccaaaacacttggagggcttctacgttcaaaggtagacataacagagtggacttcaattttgaacagcg 10032567  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  10032568 acatatggaacttatcaaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcatttgaaaagatgttttgca 10032656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10089255 - 10089443
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    ||||| |||||||| ||| ||||||||||| | |||||| |||||||||||||||||||||  ||||| ||||  ||||||||||||||||||||||||     
T  10089255 gcaaggaagtgtggaggattgccaatagctgccaaaacactaggaggacttctacgttcaaaggtagaaataacagagtggacttcaattttgaacagcg 10089354  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||| ||||||||||||||||||    
T  10089355 acatatggaacttatcaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctgtcatttgaaaagatgttttgca 10089443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10127393 - 10127581
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||  ||||||||||  |||||||||||||||||||||| ||    
T  10127393 gcaagaaagtgtggaggattgccaatagctgctaaaacactaggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaacaaca 10127492  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||   ||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  10127493 acatatggaacttgcgaaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcatttgaaaagatgttttgca 10127581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 10363402 - 10363214
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||| ||| |||||||| ||||||||||||| |||||||  ||||||||||  |||||||||||||||||||||||||    
T  10363402 gcaagaaagtgtggaggattgccaattgctgctaaaacactaggaggacttctccgttcaaaggtagacataacagagtggacttcaattttgaacagca 10363303  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||   |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||    
T  10363302 acatatggaacttgcgaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctctcacttgaaaagatgctttgca 10363214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10663991 - 10664179
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  10663991 gcaagaaagtgtggaggattgccaatagctgctaaaacattaggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaacagca 10664090  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||    |||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||    
T  10664091 acatatggaacttgcgcaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcatttgaagagatgttttgca 10664179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 10433648 - 10433460
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||| ||| |||||||| ||||||||||| |||||||||  ||||| ||||  |||||||||||||||||||||||||    
T  10433648 gcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaacagca 10433549  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||  ||||||||||| ||||||    
T  10433548 acgtatggaacttatcaaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcgtttgaaaagatgctttgca 10433460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 11769699 - 11769887
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||| ||  ||| |||| ||||||| |||||||||||||  ||||| ||||  ||||||||| ||||||| ||||       
T  11769699 gcaagaaagtgtggaggattgccaattgccgctataacaataggagggcttctacgttcaaaggtagatataacagagtggactgcaattttaaacaatg 11769798  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11769799 acatatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaatatcttccatctcacttgaaaagatgttttgca 11769887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 10375449 - 10375261
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||  |||||  |||  |||||||| || |||||||||||||    
T  10375449 gcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagatgtaacagagtggacatccattttgaacagca 10375350  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    |  ||||||||||| | |||||| | |||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  10375349 atgtatggaacttacctaatgattacattcttcctgctttgcatttgagttatcaatatcttccctctcatttgaaaagatgttttgca 10375261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10077734 - 10077922
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||| ||||||  ||||| ||||  ||||||||  |||||||||| || |    
T  10077734 gcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctaggttcaaaggtagatataatagagtggacaacaattttgaatagta 10077833  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    |  ||||||||||| |||||||||| |||||||||||||||||||| |||||||||  |||||| ||||| ||||||| ||||||||||    
T  10077834 atgtatggaacttaccaaatgataaaattcttcctgctttgcatttgagttatcaatgtcttccctctcatttgaaaatatgttttgca 10077922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10184707 - 10184895
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||| |||| |  ||||| ||||  ||||||||  |||||||||| ||||    
T  10184707 gcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctaggttcgaaggtagatataatagagtggacaacaattttgaatagca 10184806  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    |  ||||||||||| |||||||||| ||||||||| |||||||||| |||||||||  |||||| ||||| ||||||| ||||||||||    
T  10184807 atgtatggaacttaccaaatgataaaattcttcctactttgcatttgagttatcaatgtcttccctctcatttgaaaatatgttttgca 10184895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 10581066 - 10581263
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttca---------attt 98  Q
    ||||||| |||||| ||| ||||||||||| |||||||| ||||||||||||| | |||||  ||||||||||   |||||||||||         ||||    
T  10581066 gcaagaaggtgtgggggattgccaatagctgctaaaacactaggaggacttctcccttcaaaggtagacataacaaagtggacttcaattttttcaattt 10581165  T
Q  99 tgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    ||||||||| | ||||||||||   ||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||    
T  10581166 tgaacagcagcatatggaacttgcgaaatgataatattcttcctgcattgcatttgagttatcaatatcttccctctcatttgaaaagatgctttgca 10581263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 10517971 - 10518134
Alignment:
Q  29 ccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaacttatggaacttatcaaatg 128  Q
    ||||||||| | |||||| | ||||||||| | |||||||  ||||    ||| |||||| |||||||| | ||||||||| |||||||||||  |||||    
T  10517971 ccaatagctgccaaaacacttggaggacttatgcgttcaaaggtagttgaaaaggagtggtcttcaattctaaacagcaacatatggaacttacgaaatg 10518070  T
Q  129 ataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttt 192  Q
    |||| ||| | |||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||    
T  10518071 ataaaattttgcctgctttgcatttgagttatcaatatcttccttctcatttgaaaagatgttt 10518134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 13171501 - 13171683
Alignment:
Q  13 aaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaactta 112  Q
    ||||||||| ||| |||| |||||| |||||||| | |||||| || | |||||||  |||||   ||| ||||||||| ||||| | || ||  || ||    
T  13171501 aaagtgtggtggattgcccatagctcctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacata 13171600  T
Q  113 tggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||| |||||||||||||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  13171601 tggaacttaccaaatgataatattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 13171683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 11781577 - 11781402
Alignment:
Q  17 tgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaacttatgga 116  Q
    ||||| ||| ||||||||||| | || ||| | ||||||||| | |||||||  ||||    ||| ||||||||||||||| | ||||||||  ||||||    
T  11781577 tgtggtggattgccaatagctgccaagacacttggaggacttatgcgttcaaaggtagttgaaaaggagtggacttcaattctcaacagcaatatatgga 11781478  T
Q  117 acttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttt 192  Q
    |||||  |||||||||  || | |||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||    
T  11781477 acttacgaaatgataaagttttgcctgctttgcatttgagttatcaatatcttccttctcatttgaaaagatgttt 11781402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 13344559 - 13344741
Alignment:
Q  13 aaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaactta 112  Q
    ||||||||| ||| |||| |||||| |||||||| | |||||| || | |||||||  |||||   ||| ||||||||| ||||| | || ||  || ||    
T  13344559 aaagtgtggtggattgcccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacata 13344658  T
Q  113 tggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||| |||||||||||||| | |||||||| | | ||||||||||| ||||||| || || |||||||||||||||||    
T  13344659 tggaacttaccaaatgataatattttacctgctttacgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 13344741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 13333374 - 13333556
Alignment:
Q  13 aaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaactta 112  Q
    ||||||||| ||| |||| |||||| |||||||| | |||||| || | |||||||  |||||   ||| ||||||||| ||||| | || ||  || ||    
T  13333374 aaagtgtggtggattgcccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacata 13333473  T
Q  113 tggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||| |||||||||  ||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  13333474 tggaacttaccaaatgatacaattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 13333556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 13290233 - 13290317
Alignment:
Q  111 tatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||||| |||||||||||||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  13290233 tatggaacttaccaaatgataatattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 13290317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 13161548 - 13161632
Alignment:
Q  111 tatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||||| |||||||| ||||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  13161548 tatggaacttaccaaatgatcatattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 13161632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 8861826 - 8861936
Alignment:
Q  83 gagtggacttcaattttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttga 182  Q
    |||||||||  | ||||||||| |||  ||||||||||| ||||||| ||| || | ||||| |||| | | ||||||||| ||||||| || || ||||    
T  8861826 gagtggactgaagttttgaacaacaaaatatggaacttaccaaatgacaatgttttacctgcattgcttctgagttatcaatatcttccctcccaattga 8861925  T
Q  183 aaagatgtttt 193  Q
    |||||||||||    
T  8861926 aaagatgtttt 8861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 11159546 - 11159436
Alignment:
Q  83 gagtggacttcaattttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttga 182  Q
    |||||||||  | ||||||||| |||  ||||||||||| ||||||| ||| || | ||||| |||| | | ||||||||| ||||||| || || ||||    
T  11159546 gagtggactgaagttttgaacaacaaaatatggaacttaccaaatgacaatgttttacctgcattgcttctgagttatcaatatcttccctcccaattga 11159447  T
Q  183 aaagatgtttt 193  Q
    |||||||||||    
T  11159446 aaagatgtttt 11159436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 10889859 - 10889956
Alignment:
Q  96 ttttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgtttt 193  Q
    ||||||||| |||  ||||||||||| ||||||| ||| || | ||||| |||| | | ||||||||| ||||||| || || |||||||||||||||    
T  10889859 ttttgaacaacaaaatatggaacttaccaaatgacaatgttttacctgcattgcttctgagttatcaatatcttccctcccaattgaaaagatgtttt 10889956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 10501114 - 10501226
Alignment:
Q  83 gagtggacttcaattttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttga 182  Q
    ||||||||| ||||| |||| ||| || |||||||||||  ||||||||  ||| | ||  ||||| |||| ||||||||| ||||||| ||||| || |    
T  10501114 gagtggactgcaattctgaatagcgacatatggaacttaagaaatgatacaattttgcccactttgtatttgagttatcaatatcttccctctcatttaa 10501213  T
Q  183 aaagatgttttgc 195  Q
    ||||||| |||||    
T  10501214 aaagatgctttgc 10501226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 11148383 - 11148273
Alignment:
Q  83 gagtggacttcaattttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttga 182  Q
    |||||||||  | ||||||||| |||  ||||||||||| ||||||| ||| |  | ||||| |||| | | ||||||||| ||||||| || || ||||    
T  11148383 gagtggactgaagttttgaacaacaaaatatggaacttaccaaatgacaatgtgttacctgcattgcttctgagttatcaatatcttccctcccaattga 11148284  T
Q  183 aaagatgtttt 193  Q
    |||||||||||    
T  11148283 aaagatgtttt 11148273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 26907362 - 26907550
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||||||||||||| ||| ||||||| ||| |||||||| |||||||| ||||||||||||  ||||||||||  |||||||||||||||||||||| |     
T  26907362 gcaagaaagtgtggaggattgccaattgctgctaaaacactaggaggaattctacgttcaaaggtagacataacagagtggacttcaattttgaacaacg 26907461  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
    || |||||||||||  |||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||    
T  26907462 acgtatggaacttacgaaatgataatattcttccagctttgcatttgagttatcaataccttccctctcatttgaaaagatgttttgca 26907550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 78; Significance: 1e-36; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 58024 - 57827
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaatttt-------- 99  Q
    ||||||| |||||| ||| ||||||||||| |||||||| ||||||||||||| | |||||  ||||||||||   ||||||||||||||||            
T  58024 gcaagaaggtgtgggggattgccaatagctgctaaaacactaggaggacttctcctttcaaaggtagacataacatagtggacttcaattttttcaattt 57925  T
Q  100 -gaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgca 196  Q
     |||||||| | ||||||||||   |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||    
T  57924 tgaacagcagcatatggaacttgcgaaatgataatattcttcctgctttgcatttgagttatcaatatcttccctctcatttgaaaagatgctttgca 57827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 135487 - 135305
Alignment:
Q  13 aaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaactta 112  Q
    ||||||||| ||| |||| |||||| |||||||| | |||||| || | |||||||  |||||   ||| ||||||||| ||||| | || ||  || ||    
T  135487 aaagtgtggtggattgcccatagctcctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacata 135388  T
Q  113 tggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||| |||||||||||||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  135387 tggaacttaccaaatgataatattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 135305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 145538 - 145356
Alignment:
Q  13 aaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaactta 112  Q
    ||||||||| ||| |||| |||||| |||||||| | |||||| || | |||||||  |||||   ||| ||||||||| ||||| | || ||  || ||    
T  145538 aaagtgtggtggattgcccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacata 145439  T
Q  113 tggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||| |||||||||  ||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  145438 tggaacttaccaaatgatacaattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 145356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 153843 - 153661
Alignment:
Q  13 aaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaactta 112  Q
    ||||||||| ||| |||| |||||| |||||||| | |||||| || | |||||||  |||||   ||| ||||||||| ||||| | || ||  || ||    
T  153843 aaagtgtggtggattgcccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaattctaaatagtgacata 153744  T
Q  113 tggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttttgc 195  Q
    ||||||||| |||||||||  ||| | |||||||||| | ||||||||||| ||||||| || || |||||||||||||||||    
T  153743 tggaacttaccaaatgatacaattttacctgctttgcgtctaagttatcaatatcttccctcacatttgaaaagatgttttgc 153661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 44957284 - 44957109
Alignment:
Q  17 tgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagcaacttatgga 116  Q
    ||||| ||| ||||||||||| | |||||| | ||||||||| | |||||||   |||    ||| ||||||||||||||| |||| ||| || ||||||    
T  44957284 tgtggtggattgccaatagctgccaaaacactgggaggacttatgcgttcaaagatagttgaaaaggagtggacttcaattctgaatagcgacatatgga 44957185  T
Q  117 acttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttt 192  Q
    ||| |  ||||||||  ||| | |||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||    
T  44957184 actaacgaaatgatacaattttgcctgctttgcatttgagttatcaatatcttccttctcatttgaaaagatgttt 44957109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 11485578 - 11485687
Alignment:
Q  83 gagtggacttcaattttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttga 182  Q
    ||||||||| ||||| || | ||| || |||||||||||  ||||||||  || || || ||||||||||| ||||||||| ||||||| ||||| || |    
T  11485578 gagtggactacaattctgcatagcgacatatggaacttaaaaaatgatacaatcctgccagctttgcatttgagttatcaatatcttccctctcatttaa 11485677  T
Q  183 aaagatgttt 192  Q
    ||||||||||    
T  11485678 aaagatgttt 11485687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 29837208 - 29837289
Alignment:
Q  111 tatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttt 192  Q
    ||||||||||||||||||||||  |  | ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||    
T  29837208 tatggaacttatcaaatgataaagtcatgcctgcattgcatttgagttatcaagatcttccttgtcacttgaaaagatgttt 29837289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 17852456 - 17852339
Alignment:
Q  79 aaatgagtggacttcaattttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcac 178  Q
    ||||||||||||| ||||| |||| ||| |  ||||| | |||  ||||||||| ||||| || ||||||||||| ||||||||| ||||||| |||||     
T  17852456 aaatgagtggactgcaattctgaatagcgatatatggcaattacaaaatgataaaattctcccggctttgcatttgagttatcaatatcttccgtctcat 17852357  T
Q  179 ttgaaaagatgttttgca 196  Q
    ||||||| ||||||||||    
T  17852356 ttgaaaatatgttttgca 17852339  T

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Target: chr6 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 31679337 - 31679153
Alignment:
Q  8 gcaagaaagtgtggcggactgccaatagctactaaaacattaggaggacttctacgttcaactgtagacataaatgagtggacttcaattttgaacagca 107  Q
    |||| ||||||| ||||| ||||||||||| | |||||| | |||||||||||||| ||||  || ||    || ||||||| | ||||||| ||||       
T  31679337 gcaaaaaagtgttgcggattgccaatagctgccaaaacacttggaggacttctacgctcaaaagtggatgcgaaagagtggagtgcaattttaaacaatg 31679238  T
Q  108 acttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttt 192  Q
    || ||||||| ||  ||||||||||| |||| ||||| |||| ||| ||||||||| ||||||| ||||| ||||||| ||||||    
T  31679237 acatatggaattttccaaatgataatgttctccctgccttgcttttgagttatcaatatcttccttctcatttgaaaacatgttt 31679153  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 826457 - 826551
Alignment:
Q  98 ttgaacagcaacttatggaacttatcaaatgataatattcttcctgctttgcatttaagttatcaagatcttccatctcacttgaaaagatgttt 192  Q
    |||||||||||| |||||||| || ||||| |||| ||||| |||||||||| ||| ||||||| | | ||||| ||||| ||||||||||||||    
T  826457 ttgaacagcaacatatggaacataccaaataataacattctgcctgctttgcttttgagttatctataccttccctctcatttgaaaagatgttt 826551  T

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