View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-43 (Length: 173)

Name: NF4226-Insertion-43
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-43
NF4226-Insertion-43
[»] chr7 (3 HSPs)
chr7 (10-173)||(43075903-43076066)
chr7 (10-173)||(43086130-43086293)
chr7 (10-173)||(43089801-43089964)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 6e-88; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 43076066 - 43075903
Alignment:
Q  10 cttttggttactttttattggttatgcttacttatgcatgtgtatatccttgtctatattcttggccacctgtagtatattattggatcaataatgaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43076066 cttttggttactttttattggttatgcttacttatgcatgtgtatatccttgtctatattcttggccacctgtagtatattattggatcaataatgaaga 43075967  T
Q  110 gtgtagtatataattaattttcaaattgaaggtctttcttttttaatagaaagttgaatgtcta 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43075966 gtgtagtatataattaattttcaaattgaaggtctttcttttttaatagaaagttgaatgtcta 43075903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 43086293 - 43086130
Alignment:
Q  10 cttttggttactttttattggttatgcttacttatgcatgtgtatatccttgtctatattcttggccacctgtagtatattattggatcaataatgaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43086293 cttttggttactttttattggttatgcttacttatgcatgtgtatatccttgtctatattcttggccacctgtagtatattattggatcaataatgaaga 43086194  T
Q  110 gtgtagtatataattaattttcaaattgaaggtctttcttttttaatagaaagttgaatgtcta 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43086193 gtgtagtatataattaattttcaaattgaaggtctttcttttttaatagaaagttgaatgtcta 43086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 43089964 - 43089801
Alignment:
Q  10 cttttggttactttttattggttatgcttacttatgcatgtgtatatccttgtctatattcttggccacctgtagtatattattggatcaataatgaaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43089964 cttttggttactttttattggttatgcttacttatgcatgtgtatatccttgtctatattcttggccacctgtagtatattattggatcaataatgaaga 43089865  T
Q  110 gtgtagtatataattaattttcaaattgaaggtctttcttttttaatagaaagttgaatgtcta 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43089864 gtgtagtatataattaattttcaaattgaaggtctttcttttttaatagaaagttgaatgtcta 43089801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University