View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-44 (Length: 149)
Name: NF4226-Insertion-44
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-44 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 7e-72; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 7e-72
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 25002349 - 25002209
Alignment:
| Q |
9 |
ttctgataaagcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtg |
108 |
Q |
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| T |
25002349 |
ttctgataaagcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtg |
25002250 |
T |
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| Q |
109 |
ataatgttggattgttgaattcatcacgacctatgaattga |
149 |
Q |
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| T |
25002249 |
ataatgttggatcgttgaattcatcacgacctatgaattga |
25002209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 24984664 - 24984804
Alignment:
| Q |
9 |
ttctgataaagcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtg |
108 |
Q |
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| T |
24984664 |
ttctgataaagcattagttacctgattgcagcttgaacataataaagatgacgataaaagtaatcgattctataagtatctaaaagggattcttcaagtg |
24984763 |
T |
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| Q |
109 |
ataatgttggattgttgaattcatcacgacctatgaattga |
149 |
Q |
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| T |
24984764 |
acagtttaggatcgttgaactcatcacgacctgtcaattga |
24984804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 25044868 - 25044985
Alignment:
| Q |
17 |
aagcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgtt |
116 |
Q |
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| T |
25044868 |
aagcattacttacttgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgagagtatctataagggattcttcaagcgacagtgtt |
25044967 |
T |
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| Q |
117 |
ggattgttgaattcatca |
134 |
Q |
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| T |
25044968 |
ggatcattgaactcatca |
25044985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 25016046 - 25016119
Alignment:
| Q |
47 |
ataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttggat |
120 |
Q |
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| T |
25016046 |
ataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggat |
25016119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 4623326 - 4623370
Alignment:
| Q |
44 |
aagataataaagatgacgataaaagtaatcaattctgtcagtatc |
88 |
Q |
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| T |
4623326 |
aagataatatagatgacgataaaagtaatcaattctgttagtatc |
4623370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 25037329 - 25037370
Alignment:
| Q |
47 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
88 |
Q |
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| T |
25037329 |
ataataaagatgtcgataaaagtaatcgattctgtaagtatc |
25037370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 29408269 - 29408180
Alignment:
| Q |
31 |
tgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttggat |
120 |
Q |
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| T |
29408269 |
tgattgcagatttaagataatatagatgattataaaagtaatcaatcctggctgtatctgcaagggcttcttcaagtgagagtgttggat |
29408180 |
T |
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