View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-45 (Length: 105)
Name: NF4226-Insertion-45
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-45 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 54306420 - 54306491
Alignment:
| Q |
8 |
gtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagctcatccag |
79 |
Q |
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| T |
54306420 |
gtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagctcatccag |
54306491 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 54300283 - 54300325
Alignment:
| Q |
37 |
tgaacaaggacatttaatcaagcattttgaacagctcatccag |
79 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
54300283 |
tgaacaaggatatttaatcaagcattttgaacagctcgtccag |
54300325 |
T |
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