View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-5 (Length: 815)
Name: NF4226-Insertion-5
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 6 - 815
Target Start/End: Complemental strand, 38360111 - 38359302
Alignment:
| Q |
6 |
caaaaccagttggtgttgaagaagtgaattatggcagatagagcaaccaatctacaatgcggggaccaatttctttcagctatccttatgatgtccaaaa |
105 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||| |
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| T |
38360111 |
caaaaccagatggtgttgaagcagtgaattatggcagatagagcaaccagtctacattgtggggaccaatttcttttagctatccttatgatgtccaaaa |
38360012 |
T |
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| Q |
106 |
aacatgaaaagtttcaggtgattttgagaatgtgaaacaaccagg-ccaaatgtcataagagaaagtgcattcaaggaacatgtgagactgagtttcttg |
204 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
38360011 |
aacttgaaaagtttcaggtgattttgagaatgtgaaacaaccaggaccaaatgtcataagagaaagtgcattcacggaacatgtgagattgagtttcttg |
38359912 |
T |
|
| Q |
205 |
atttttccacaaagagaacaaatagagggaagcaaacaacctcttttcgcaagaatgtcatatgtggggagcttgttgagaagaatcctccaaacaagaa |
304 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38359911 |
atttttccacaaagagaaaaaatagagggaagcaaacaacctcttttcgcaagaatgtcatctgtggggagcttgttgagaagaatcctccaaacaagaa |
38359812 |
T |
|
| Q |
305 |
gaggcttggaggggggcaatagtagcatgccaaatagtttcagcgcaactaatgttttgaggatgaggggaagtatgaaaacgatatgcatctttaaagg |
404 |
Q |
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||||||||||||||| |||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359811 |
gaggcttggagggggacaatagcagcattacaaatagttttagcccaactaatgttttgaggatgaggggaagtatgaaaacgatatgcatctttaaagg |
38359712 |
T |
|
| Q |
405 |
agagacttccatcatgagatgacttccaaatcagcttatcttccttgtaagaattaggaatggacaaaagtttcaacttctgttccaaaactgggcaaac |
504 |
Q |
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| T |
38359711 |
agagacttccatcatgagatggcttccaaatcagcttatcttccttgtaagaattaggaatggacaaaagtttcaacttctgttccaaaactaggcaaac |
38359612 |
T |
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| Q |
505 |
aactaagatttcttaggagacactccacttaaaattatgaatgcaagtatcaagagtagcttgtaaatgactatgaagatgggggaatgttaagtgcaat |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38359611 |
gactaagatttcttaggagacactccacttaaaattatgaatgcaagtatcaagagtagcttgtaaatgactatgaagatgggggaatgttaagtgcagt |
38359512 |
T |
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| Q |
605 |
tgtcaaaggctctctacaccaggaatcaatccagaagttaatattttccccatttcgaatatttcaagacacattttctagcacagtagagtatttatgc |
704 |
Q |
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| T |
38359511 |
tgtcaaaggctctctacaccaggaatcaatccagaagttaatattttccccatttccaatatttcaagacacattttctagcacagtagagtatttatgc |
38359412 |
T |
|
| Q |
705 |
ctagcaccaatcaaaacagatgaagaaacatgataatcgactggnnnnnnngttccttaggatcctgcttctaatgaattgatcccattgtaaatctgat |
804 |
Q |
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| T |
38359411 |
ctagcaccactcaaaacagatgacgaaacatgataattgactgg-ttttttgttccttaggatcctgcttctaatgaactgatcccattgtaaatctgat |
38359313 |
T |
|
| Q |
805 |
tgcatgatatc |
815 |
Q |
| |
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||||||||||| |
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| T |
38359312 |
tgcatgatatc |
38359302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 564
Target Start/End: Original strand, 18525907 - 18526081
Alignment:
| Q |
390 |
atgcatctttaaaggagagacttccatcatgagatgacttccaaatcagcttatcttccttgtaagaattaggaatggacaaaagtttcaacttctgttc |
489 |
Q |
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||||||||||||| || || | |||||||||||| ||||||||| |||||||| |||||||||| |||||||| |||| | ||||| || || | |
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| T |
18525907 |
atgcatctttaaatgataggttaccatcatgagattgcttccaaataagcttatcctccttgtaagtgttaggaattgacaccaacttcaatttttgctg |
18526006 |
T |
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| Q |
490 |
caaaactgggcaaacaactaagatttcttaggagacactccacttaaaattatgaatgcaagtatcaagagtagc |
564 |
Q |
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| T |
18526007 |
aagaattgggcaagcaattaagatttcttgagggacacgccgcctaaaattgtgaatataagaatcaagagtagc |
18526081 |
T |
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