View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226-Insertion-6 (Length: 788)
Name: NF4226-Insertion-6
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-6 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 710; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 8 - 788
Target Start/End: Original strand, 912850 - 913632
Alignment:
| Q |
8 |
agaatgtgcttaagcacccagggtttgtttcttccttggtaacagctacttatataaaacctgaatcatccagttcttggttcttttttggattgctttc |
107 |
Q |
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| T |
912850 |
agaatgtgcttaagcacctagggtttgtttcttccttggtaacagctacttatataaaacctgaatcatccagttcttggttcttttttggattgctttc |
912949 |
T |
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| Q |
108 |
actgacagttcactgttatttcgtgtatctcctgatttccgatttcgtcaaccaagaacatcgcctaaacaattcaataaaaaagaggatgtatttaact |
207 |
Q |
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| T |
912950 |
actgacagttcattgttatttcgtgtatctcctgatttccgatttcgtcaaccaagaacatcgcctaaacaattcaataaaaaagaggatgtatttaact |
913049 |
T |
|
| Q |
208 |
ctatcctgctgcagtcttgcaacttccatccagttctttgtcatttctttggattttggcgttttggtaatcattgcatgggttgtttcttggacatttt |
307 |
Q |
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| T |
913050 |
ctatcctgctgcagtcttgcaacttccatccagttctttgttatttctttggattttggcgttttggtaatcattgcatgggttggttcttggacatttt |
913149 |
T |
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| Q |
308 |
tgattccacacacactattgattgagttgcttgtgtatgtttgcaatgttttcatcaacattgcagatacttctacatggttgttatatactatcatcaa |
407 |
Q |
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| T |
913150 |
tgattccacacacactattgattgagttgcttgtgtatgttcgcaatgttttcatcaacattgcagatacttctacatggttgttatatactatcatcaa |
913249 |
T |
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| Q |
408 |
tgcctttcttcttgttagaggagtaatcattccagtcagacacaatcatggagatagtgtggcaattattgtccaacggctcagcagcgaggtgaaaggt |
507 |
Q |
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| T |
913250 |
tgcctttcttcttgttagaggagtaatcattccagtcagacacaatcatggagacagtgtggcaattattgtctaacggctcagcagcgaggtgaaaggt |
913349 |
T |
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| Q |
508 |
ctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagac---tcggtaccggtaattgtgtagttaatgagtaatgacactgtctc |
604 |
Q |
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| T |
913350 |
ctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctt |
913449 |
T |
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| Q |
605 |
tttatccgcattaggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaatttt |
704 |
Q |
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| T |
913450 |
ttta-ctgtattaggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaatttt |
913548 |
T |
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| Q |
705 |
cagttttcagatgaagcgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgca |
788 |
Q |
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| T |
913549 |
cagttttcagatgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgca |
913632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 419 - 788
Target Start/End: Complemental strand, 889155 - 888784
Alignment:
| Q |
419 |
ttgttagaggagtaatcattccagtcagacacaatcatggagatagtgtggcaattattgtccaacggctcagcagcgaggtgaaaggtctttttcgagg |
518 |
Q |
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| T |
889155 |
ttgttagaggagtaatcattccagtcagacacaatcatggagacagtgtggcaattattgtctaacggctcagcagcgaggtgaaaggtctttttcgagg |
889056 |
T |
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| Q |
519 |
atgtgaacaacatggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttatccgcat |
615 |
Q |
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| T |
889055 |
atgtgaacaacatggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtcttttta-ctgtat |
888957 |
T |
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| Q |
616 |
taggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcaga |
715 |
Q |
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| T |
888956 |
taggttatgtaattgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcaga |
888857 |
T |
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| Q |
716 |
tgaagcgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgca |
788 |
Q |
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| T |
888856 |
tgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgca |
888784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 493 - 595
Target Start/End: Original strand, 1002085 - 1002189
Alignment:
| Q |
493 |
agcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagac---tcggtaccggtaattgtgtagttaatgag |
589 |
Q |
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| T |
1002085 |
agcgaggtgaaaggtcttttg-gaggatgtgaacaacatggttgaatctacttcgtcttgaaaaagacacatcggtaccggtaattgtgtagttaatgag |
1002183 |
T |
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| Q |
590 |
taatga |
595 |
Q |
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| T |
1002184 |
taatga |
1002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 715 - 787
Target Start/End: Original strand, 1002403 - 1002475
Alignment:
| Q |
715 |
atgaagcgtttgtttggtttcttatgttataacggtagtaacttgagtccaatatgaagaacatgttatttgc |
787 |
Q |
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| T |
1002403 |
atgaagtgcttgtttggtttcttatattataacggtagtaactcgcgtccaatctgatgatcatgttatttgc |
1002475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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