View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-7 (Length: 715)

Name: NF4226-Insertion-7
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-7
NF4226-Insertion-7
[»] chr8 (6 HSPs)
chr8 (125-684)||(11345639-11346185)
chr8 (8-126)||(11345291-11345409)
chr8 (8-120)||(11338766-11338877)
chr8 (14-126)||(11339615-11339727)
chr8 (8-126)||(11359169-11359287)
chr8 (459-593)||(11359857-11359991)
[»] chr7 (11 HSPs)
chr7 (455-596)||(15507849-15507990)
chr7 (465-525)||(24034934-24034994)
chr7 (452-529)||(26236028-26236105)
chr7 (445-529)||(24001381-24001465)
chr7 (8-119)||(24031024-24031135)
chr7 (452-518)||(24009576-24009642)
chr7 (484-529)||(26217104-26217149)
chr7 (484-529)||(26229354-26229399)
chr7 (451-567)||(23992697-23992813)
chr7 (493-529)||(26255979-26256015)
chr7 (88-121)||(19357683-19357716)
[»] chr3 (1 HSPs)
chr3 (484-576)||(36339250-36339342)
[»] chr4 (2 HSPs)
chr4 (455-552)||(23839864-23839961)
chr4 (466-529)||(23847976-23848039)
[»] chr6 (3 HSPs)
chr6 (455-587)||(19747505-19747637)
chr6 (484-587)||(5978151-5978254)
chr6 (484-581)||(33568012-33568109)
[»] chr5 (1 HSPs)
chr5 (484-529)||(23085922-23085967)
[»] chr1 (1 HSPs)
chr1 (484-573)||(17954530-17954619)
[»] scaffold0649 (1 HSPs)
scaffold0649 (471-570)||(4603-4702)
[»] scaffold0707 (1 HSPs)
scaffold0707 (484-581)||(4406-4503)


Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 125 - 684
Target Start/End: Original strand, 11345639 - 11346185
Alignment:
125 cctaatggttcagttccaacactgaaattcaaaccgcatagctgatggtctcgagtcccaaaagctctagttcctgttctcatggcagggttgcatacac 224  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
11345639 cctaatgtttcagttccaacactgaaattcaaaccgcatagctgactgtctcgagtcccaaacgctctagttcctgttctcatggcagggttgcatacac 11345738  T
225 aaaaccaatacttacgataccctgtgttatatgaactgatcagaaagcacagtaattcgttgcaagaattaacaacctggcagccgcagttataaaaagt 324  Q
     |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                |||    
11345739 gaaaccaatacttacaataccttgtgttatatgaactgatcagaaagcacagtaatccgttgcaagaattaacaacctggcc---------------agt 11345823  T
325 gcagccatggcaatagtcgccggaaagagtgatgaacggattcttaaacaaacgagctacaggtagggattggactggaccaataaggcacctccaatct 424  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
11345824 gcaaccatggcaatagtcgccggaaagagtgatgaacgaattcttaaacaaacgagctacaggtagggattggactagaccaataaggcacctctaatct 11345923  T
425 ttgggtatgaggcgtgggtggttctgagatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatt 524  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11345924 tcgagtatgaggcgtgggtggttctgagatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatt 11346023  T
525 tgaattggacaagggttttcacgttaagtaatgataggatttcggctatgagatcgtcgggaaggaacactggtggtaatggtaacttattctttttcat 624  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||    
11346024 tgaattggacaatggttttcacgttaagtaatgataggatttcggctatgagatcggtgggaaggaacacaggtggtaatggtaacttattctttttcat 11346123  T
625 cccacctttccttcttct---tcatcatcatcatcaacttgtaataccttgttatcttcttca 684  Q
        | ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
11346124 -gttcttttccttcttcttcatcatcatcatcatcaacttgtaataccttgttatcttcttca 11346185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 11345291 - 11345409
Alignment:
8 gaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagttttcaatagccaaccagttaatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
11345291 gaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgttcataaaaaggataaaaatagttttcaatagccaaccagtaaatag 11345390  T
108 tgcctctcaaatacgcacc 126  Q
    |||||||||||||| ||||    
11345391 tgcctctcaaatacacacc 11345409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 11338766 - 11338877
Alignment:
8 gaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagttttcaatagccaaccagttaatag 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||    
11338766 gaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgat-ataaaaaggataaaaatagttttgaatagccaaccagtaaatag 11338864  T
108 tgcctctcaaata 120  Q
    |||||||||||||    
11338865 tgcctctcaaata 11338877  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 11339615 - 11339727
Alignment:
14 tcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagttttcaatagccaaccagttaatagtgcctc 113  Q
    ||||||||||| |||||||||||||||||| ||||||||||||  | ||||| |||||| |||||||| || | |||||||||||||| ||||||||| |    
11339615 tcaagggaaaccatcttgaattgatcaacacgagtaatagactcataatcatgaaaagggtaaaaataattctgaatagccaaccagtaaatagtgccac 11339714  T
114 tcaaatacgcacc 126  Q
    | ||||| |||||    
11339715 ttaaatatgcacc 11339727  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 11359169 - 11359287
Alignment:
8 gaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagttttcaatagccaaccagttaatag 107  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||| |   | | |||||||||||||||||||||| | |||||| ||| ||| |||||    
11359169 gaaagatcaagggagacaatcttgaactgatcaacatgagtaatagccccataaccataaaaaggataaaaatagttctgaatagctaactagtaaatag 11359268  T
108 tgcctctcaaatacgcacc 126  Q
    |||| ||||||||| ||||    
11359269 tgccgctcaaatacacacc 11359287  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 459 - 593
Target Start/End: Original strand, 11359857 - 11359991
Alignment:
459 ttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatga 558  Q
    ||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||||||||  ||| ||| | ||| || ||||||||||| ||| | |||    
11359857 ttttaagttgtttttggacgaaggtcggatcagagatgagagtgttccatgacttgctcagacatatgagtcggagaatggttttcacgtcaaggagtga 11359956  T
559 taggatttcggctatgagatcgtcgggaaggaaca 593  Q
    ||||||||  || ||||| || || ||||||||||    
11359957 taggatttgagcgatgagttcctcaggaaggaaca 11359991  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 596
Target Start/End: Complemental strand, 15507990 - 15507849
Alignment:
455 gactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagta 554  Q
    ||||| |||||||| |||| || ||||| |||||| || |||||||  |||||||||||||||| |||||||| ||| || | |||||| | |||||| |    
15507990 gacttcttaaggtgcttttcgatgaaggttggatcagatatgagagctttccatgacttgctcaagcatttgagttgcacgatggtttttatgttaagga 15507891  T
555 atgataggatttcggctatgagatcgtcgggaaggaacactg 596  Q
    | ||||||| |||||||||||| |||||||||||||||||||    
15507890 aggataggacttcggctatgagctcgtcgggaaggaacactg 15507849  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 465 - 525
Target Start/End: Complemental strand, 24034994 - 24034934
Alignment:
465 ggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcattt 525  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
24034994 ggtgtttttggacgaagagtggatcggagatgagagcgttccatgacttgctcacgcattt 24034934  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 452 - 529
Target Start/End: Complemental strand, 26236105 - 26236028
Alignment:
452 gatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    |||||||| ||||| || || | |||||||| |||||| ||||||||||||||||| |||||||||||||||||||||    
26236105 gatgacttcttaagatggttgtcgacgaaggttggatcagagatgagagtgttccaggacttgctcacgcatttgaat 26236028  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 445 - 529
Target Start/End: Complemental strand, 24001465 - 24001381
Alignment:
445 gttctgagatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    |||||| |||||||| ||||| ||  ||||||| |||| |||||||||||||| ||||||||||||||||||||  |||||||||    
24001465 gttctgtgatgacttcttaagatgcatttggacaaaggttggatcggagatgaaagtgttccatgacttgctcagacatttgaat 24001381  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 24031135 - 24031024
Alignment:
8 gaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgtgatcataaaaaggataaaaatagttttcaatagccaaccagttaatag 107  Q
    ||||| |||||||||| ||||  ||| ||||||||||||||||||| ||  | ||||||| || ||| ||||||||| | |||||||||  ||| || ||    
24031135 gaaagatcaagggaaataatcacgaagtgatcaacatgagtaatagtctcataatcataacaacgattaaaatagttctgaatagccaatgagtaaacag 24031036  T
108 tgcctctcaaat 119  Q
    |||| |||||||    
24031035 tgccactcaaat 24031024  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 518
Target Start/End: Complemental strand, 24009642 - 24009576
Alignment:
452 gatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctca 518  Q
    |||||||| ||||| ||  ||||||| |||  |||||||||||||| ||||||||||||||||||||    
24009642 gatgacttcttaagatgcatttggacaaagtttggatcggagatgaaagtgttccatgacttgctca 24009576  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 26217149 - 26217104
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    |||||||||||||||||||||||| || |||||||||| |||||||    
26217149 tggatcggagatgagagtgttccaggatttgctcacgcttttgaat 26217104  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 26229399 - 26229354
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    |||||||||||||||||||||||| || |||||||||| |||||||    
26229399 tggatcggagatgagagtgttccaggatttgctcacgcttttgaat 26229354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 567
Target Start/End: Complemental strand, 23992813 - 23992697
Alignment:
451 agatgactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgtta 550  Q
    |||||| || |||||||| |||| ||| |||| ||||||||| |||| ||||  |||||||||||||| ||| |||| ||| |||| | |||| ||  ||    
23992813 agatgaattcttaaggtgcttttcgacaaaggttggatcggatatgatagtgaaccatgacttgctcaggcacttgagttgcacaatgtttttaacccta 23992714  T
551 agtaatgataggatttc 567  Q
    || || |||||||||||    
23992713 agaaaagataggatttc 23992697  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 26256015 - 26255979
Alignment:
493 gatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    ||||||||||||||| |||||||||||||||||||||    
26256015 gatgagagtgttccaagacttgctcacgcatttgaat 26255979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 19357716 - 19357683
Alignment:
88 aatagccaaccagttaatagtgcctctcaaatac 121  Q
    ||||||||||||||||||||||||||||| ||||    
19357716 aatagccaaccagttaatagtgcctctcacatac 19357683  T

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Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 484 - 576
Target Start/End: Complemental strand, 36339342 - 36339250
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatgataggatttcggctatgag 576  Q
    |||||| ||||||||||||||||||||||||||||| || |||||| | |||| |||||||||| |||||||  ||||||||||||| |||||    
36339342 tggatctgagatgagagtgttccatgacttgctcacacacttgaatcgcacaatggttttcacgctaagtaacaataggatttcggcgatgag 36339250  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 455 - 552
Target Start/End: Complemental strand, 23839961 - 23839864
Alignment:
455 gactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaag 552  Q
    ||||| ||||||| ||||| |||  ||| |||||||||||||||||||||||||||||||||||| ||||||||| | |  | |||||||||||||||    
23839961 gacttgttaaggtattttttgacataggctggatcggagatgagagtgttccatgacttgctcacacatttgaatcgcaagatggttttcacgttaag 23839864  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 466 - 529
Target Start/End: Original strand, 23847976 - 23848039
Alignment:
466 gtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    |||||||| ||| |||| |||||||||||||||||||||||| ||||||||||| || ||||||    
23847976 gtgttttttgacaaaggttggatcggagatgagagtgttccacgacttgctcacacaattgaat 23848039  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 455 - 587
Target Start/End: Original strand, 19747505 - 19747637
Alignment:
455 gactttttaaggtgtttttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagta 554  Q
    ||||| || ||||||||||| |||||||  | |||   |||||||| |||||||||||||||||| ||||| ||||| |  | ||||||||||||||| |    
19747505 gacttcttgaggtgtttttgtacgaaggtcgaatcattgatgagagagttccatgacttgctcacacattttaattgcatgatggttttcacgttaagaa 19747604  T
555 atgataggatttcggctatgagatcgtcgggaa 587  Q
    | ||||||||||| || || || ||||||||||    
19747605 aggataggatttctgcgataagttcgtcgggaa 19747637  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 587
Target Start/End: Complemental strand, 5978254 - 5978151
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatgataggatttcggctatgagatcgtcg 583  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||| |  | | |||||||||| |||| || |||||||||||| | ||||| |||||     
5978254 tggattggagatgagagtgttccatgacttgttcacgcacttgaatcgtgcgatggttttcacgctaaggaacgataggatttcgacgatgagttcgtca 5978155  T
584 ggaa 587  Q
    ||||    
5978154 ggaa 5978151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 581
Target Start/End: Complemental strand, 33568109 - 33568012
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatgataggatttcggctatgagatcgt 581  Q
    ||||||||||||||| | ||||||||| ||||| ||||| ||||||||    | ||| |||||| |||| || || |||||||| |||||||| ||||    
33568109 tggatcggagatgagcgagttccatgatttgcttacgcacttgaattgtgtgatggtcttcacgctaagaaaagaaaggatttcagctatgagttcgt 33568012  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 23085967 - 23085922
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaat 529  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||    
23085967 tggatcggagacgagagtgttccatgacttgcttacgcatttgaat 23085922  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 17954530 - 17954619
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatgataggatttcggctat 573  Q
    ||||||||||| |||||| |||||||| ||||  |||||||||| ||| |  | ||||| ||| ||||| || |||||||||||||||||    
17954530 tggatcggagacgagagttttccatgatttgcaaacgcatttgagttgcaggatggtttccacattaaggaaagataggatttcggctat 17954619  T

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Target: scaffold0649 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 570
Target Start/End: Complemental strand, 4702 - 4603
Alignment:
471 tttggacgaagggtggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatgataggatttcggc 570  Q
    |||||||||||   |||||||||||||| | ||||||||| |||||||| ||||||| ||    ||| | |||||||| ||| || ||||||||||||||    
4702 tttggacgaagatgggatcggagatgagtgagttccatgatttgctcacacatttgagtttcgtaagagatttcacgtcaaggaaggataggatttcggc 4603  T

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Target: scaffold0707 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 581
Target Start/End: Complemental strand, 4503 - 4406
Alignment:
484 tggatcggagatgagagtgttccatgacttgctcacgcatttgaattggacaagggttttcacgttaagtaatgataggatttcggctatgagatcgt 581  Q
    ||||||||||||||| | ||||||||| ||||| ||||| ||||||||    | ||| |||||| |||| || || |||||||| |||||||| ||||    
4503 tggatcggagatgagcgagttccatgatttgcttacgcacttgaattgtgtgatggtcttcacgctaagaaaagaaaggatttcagctatgagttcgt 4406  T

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