View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4226-Insertion-8 (Length: 693)
Name: NF4226-Insertion-8
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226-Insertion-8 |
 | |
|
| [»] chr1 (10 HSPs) |
| |
|
| [»] scaffold0710 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 660; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 7 - 693
Target Start/End: Original strand, 51771920 - 51772607
Alignment:
| Q |
7 |
acttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttcctttacagacgaatcatgaaaatcgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51771920 |
acttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttcctttacagacgaatcatgaaaatcgat |
51772019 |
T |
|
| Q |
107 |
ctgtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcac |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772020 |
ctgtattgatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcac |
51772119 |
T |
|
| Q |
207 |
aaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgccttttgtctgcaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772120 |
aaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgccttttgtctgcaa |
51772219 |
T |
|
| Q |
307 |
tatctatatcagtttatgaactcctcatatagtcatttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagacttagagcaaac |
406 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772220 |
tatctatatcagtttatgaactcctcgtatagtcatttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagacttagagcaaac |
51772319 |
T |
|
| Q |
407 |
atttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgagg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772320 |
atttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgagg |
51772419 |
T |
|
| Q |
507 |
acgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcag |
606 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772420 |
acgagagcctgttgaaaatttcgcagtgttatctatccaccacatctggccctctagccggtctcctcttcatctccaatgagaaggttgccttttgcag |
51772519 |
T |
|
| Q |
607 |
tgacagatcaataaaagtctttaatcag-aaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatatacacaaaccta |
693 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51772520 |
tgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatatacacaaaccta |
51772607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 354 - 668
Target Start/End: Original strand, 51780133 - 51780438
Alignment:
| Q |
354 |
tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattct |
453 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||| ||||||| |
|
|
| T |
51780133 |
tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct |
51780232 |
T |
|
| Q |
454 |
tcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatct |
553 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||||||||||| ||| |||||||| |||| || |||||||| |||||||||||| |
|
|
| T |
51780233 |
ttaagtgggtggagtggataaattttttatgcactattttagtgtgagagag----------tgttgaaagtttctcactgttatctttccaccacatct |
51780322 |
T |
|
| Q |
554 |
ggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcag-aaggtcaaatgcgtagga |
652 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
51780323 |
ggccctctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataaaagtctataatcagaaaggtcaaatgtgtagga |
51780422 |
T |
|
| Q |
653 |
tccgctataaggtaag |
668 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51780423 |
tccgctataaggtaag |
51780438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 381 - 671
Target Start/End: Original strand, 51807869 - 51808160
Alignment:
| Q |
381 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
480 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51807869 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
51807968 |
T |
|
| Q |
481 |
tatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatc |
580 |
Q |
| |
|
|| || ||||||||||||| || | ||||| || | ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51807969 |
tacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatctggtcctctagctggtctgctcttcatc |
51808068 |
T |
|
| Q |
581 |
tccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcag-aaggtcaaatgcgtaggatccgctataaggtaagtcc |
671 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
51808069 |
tccaatgaaaaggttgccttctgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcc |
51808160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 399 - 670
Target Start/End: Original strand, 51803934 - 51804206
Alignment:
| Q |
399 |
gagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgt |
498 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| | |||| |||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
51803934 |
gagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaattcttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgt |
51804033 |
T |
|
| Q |
499 |
gagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgcc |
598 |
Q |
| |
|
||| || | ||||| || | ||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
51804034 |
gagagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaatgaaaaggtggcc |
51804133 |
T |
|
| Q |
599 |
ttttgcagtgacagatcaataaaagtctttaatcag-aaggtcaaatgcgtaggatccgctataaggtaagtc |
670 |
Q |
| |
|
|| |||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804134 |
ttctgcagtgagagaacaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
51804206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 51807496 - 51807751
Alignment:
| Q |
7 |
acttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttcctttacagacgaatcatgaaaatcgat |
106 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||| ||| | |
|
|
| T |
51807496 |
acttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttccttgacagatgaatcatgaatatcaaa |
51807595 |
T |
|
| Q |
107 |
ct-------gtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagt |
199 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
51807596 |
tttcgctaagtattgatggttttaccaacatagagtgcttt--attgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagt |
51807693 |
T |
|
| Q |
200 |
ctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc |
257 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
51807694 |
ctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc |
51807751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 51779796 - 51780046
Alignment:
| Q |
10 |
tacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttcctttac---agacgaatcatgaaaatcgat |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||| | |
|
|
| T |
51779796 |
tacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaacatctaa |
51779895 |
T |
|
| Q |
107 |
ct-------gtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctaga----aaggctga |
195 |
Q |
| |
|
| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
51779896 |
tttcgctaggtattgaatgttttaccaatatagagtgcttt--attgtttcaggtttaacaaattcaaacaagaaaaggcttgctagctaggaaggctga |
51779993 |
T |
|
| Q |
196 |
tagtctctcacaaaaagtccaagaacatg----gtgagtacccttgtaagact |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51779994 |
tagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
51780046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 51803796 - 51803852
Alignment:
| Q |
188 |
aaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagact |
244 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
51803796 |
aaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagact |
51803852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 51803615 - 51803681
Alignment:
| Q |
7 |
acttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagacttt |
73 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | || ||||||| |||| ||||||||| ||||| |
|
|
| T |
51803615 |
acttacttgattctgccactcatcaatgtcaactttcaaccaaacaacaaaacaaaagtaaaacttt |
51803681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 618
Target Start/End: Complemental strand, 12196221 - 12196136
Alignment:
| Q |
533 |
tgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaat |
618 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || || |||||||| || | | | || |||||||||| ||||| |||||||| |
|
|
| T |
12196221 |
tgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtagtgagagatcaat |
12196136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 51761423 - 51761472
Alignment:
| Q |
509 |
gagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcc |
558 |
Q |
| |
|
||||| ||||||||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
51761423 |
gagaggctgttgaaagtttcacactgttatctgtccaccacatctggtcc |
51761472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 354 - 668
Target Start/End: Original strand, 6775 - 7082
Alignment:
| Q |
354 |
tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattct |
453 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||| ||||||| |
|
|
| T |
6775 |
tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct |
6874 |
T |
|
| Q |
454 |
tcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatct |
553 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||||||||||| ||| |||||||| |||| || |||||||| |||||||||||| |
|
|
| T |
6875 |
ttaagtgggtggagtggataaattttttatgcactattttagtgtgagagag----------tgttgaaagtttctcactgttatctttccaccacatct |
6964 |
T |
|
| Q |
554 |
ggtcct--ctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcag-aaggtcaaatgcgtag |
650 |
Q |
| |
|
|| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
6965 |
ggcccctcctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataaaagtctataatcagaaaggtcaaatgtgtag |
7064 |
T |
|
| Q |
651 |
gatccgctataaggtaag |
668 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7065 |
gatccgctataaggtaag |
7082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 6438 - 6688
Alignment:
| Q |
10 |
tacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttcctttac---agacgaatcatgaaaatcgat |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||| | |
|
|
| T |
6438 |
tacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaa |
6537 |
T |
|
| Q |
107 |
ct-------gtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctaga----aaggctga |
195 |
Q |
| |
|
| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
6538 |
tttcgctaggtattgaatgttttaccaatatagagtgcttt--attgtttcaggtttaacaaattcaaacaagaaaaggcttgctagctaggaaggctga |
6635 |
T |
|
| Q |
196 |
tagtctctcacaaaaagtccaagaacatg----gtgagtacccttgtaagact |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6636 |
tagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
6688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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