View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226-Insertion-9 (Length: 687)

Name: NF4226-Insertion-9
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226-Insertion-9
NF4226-Insertion-9
[»] chr1 (1 HSPs)
chr1 (23-653)||(26837881-26838515)


Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 23 - 653
Target Start/End: Complemental strand, 26838515 - 26837881
Alignment:
Q  23 tcatgggtaaatctgacagaatactcgatacacatcatttttcttaaccttcttcaatgattacattgatttttcggtagagccnnnnnnnnnnnnggga 122  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||            ||||    
T  26838515 tcatgggtaaatctgacagaatactcgatacacattatttttctcaaccttcttcaatgattacagtgattttttggtagagccaaaaataaaaaaggga 26838416  T
Q  123 agaatttacctatagtagtactatgaaaatgtaaacttcctatgaatgagccagaaaactatatctagcagttttacataaacttttttgtaattaagtt 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26838415 agaatctacctatagtagtactatgaaaatgtaaacttcctatgaatgagccaaaaaactatatctaacagttttacataaacttttttgtaattaagtt 26838316  T
Q  223 ataactgataaccataattttgaatgcgaatcttgaggtcgcaatgtctactgatagatttaaccaaagtcaataatgattcaaacaaggcaacaattca 322  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  26838315 ataactgataaccataattttgaatgcgaatcttgaggtagcaatgtctaccgatagatttaaccaaagtcaataatgattcaaacaaggcaacaattta 26838216  T
Q  323 ctatggagtataagataataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtg 422  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838215 ctatggagtataagacaataagacaaagacatacaagccagtgcttttgatgtaataattcaaacgtggatacatcttttaggtacatgtgttttttgtg 26838116  T
Q  423 catttttagtatcatgttttataaattatgggnnnnnnntagaaa----gatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaaga 518  Q
    ||||||||||||||||||||||||||||||||       ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838115 catttttagtatcatgttttataaattatgggaaaaaaatagaaagatcgatcattcttatttttgctaaacaatcggtacaagttagttcttgaaaaga 26838016  T
Q  519 agagaagacgacgacatgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26838015 agagaagacgacgacatgttgacaaccttaatataggaatcaagagtaagttttgtggaagtaagagggaaggtgcaatgtctagtccaattgaaataaa 26837916  T
Q  619 aatacacacgctttgcaaagtaccaaccacatatc 653  Q
    |||||||||||||||||||||||||||||||||||    
T  26837915 aatacacacgctttgcaaagtaccaaccacatatc 26837881  T

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