View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_high_11 (Length: 347)
Name: NF4226_high_11
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 2811620 - 2811946
Alignment:
| Q |
1 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
100 |
Q |
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| T |
2811620 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
2811719 |
T |
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| Q |
101 |
gcgtgttgaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaacaaaacaactgattaagttg |
200 |
Q |
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| T |
2811720 |
gagtgttgaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaacaaaacagctgattaagtt- |
2811818 |
T |
|
| Q |
201 |
gaacgcatattatatagttgttcatgtagacgataggtgggagagctttcaaagaagttaatgtgtgaaagttcatttcaactcattcaggaagtgatta |
300 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2811819 |
gaacacatat--tatagttgttcatgtagacgataggtgggagagctttcaaagaagttaatgtgtgaaagttcatttcaactcattcaggaagtgatta |
2811916 |
T |
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| Q |
301 |
tcgaaaagactcgtagcaatagtacaagat |
330 |
Q |
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| T |
2811917 |
tcgaaaagactcatagcaatagtacaagat |
2811946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 4276296 - 4276476
Alignment:
| Q |
1 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276296 |
caatcctagccccgtgaacaggtggattagagtacattggtcgagcaagccttttcaattggctctttaccctgaaatacatagtaatcatcaagtcgtt |
4276395 |
T |
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| Q |
101 |
gcgtgttgaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaac |
181 |
Q |
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| T |
4276396 |
gagtgttaaccaagacaaaacttttactatagcatacattgcattggtcaagttgaatcaaagatgtcttccttcttaaac |
4276476 |
T |
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