View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_high_12 (Length: 337)
Name: NF4226_high_12
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 18715002 - 18714689
Alignment:
| Q |
8 |
ggagcagcacagaaagacccatccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcacc |
107 |
Q |
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| T |
18715002 |
ggagcaccgcagaaagacccatccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcacc |
18714903 |
T |
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| Q |
108 |
gcaaccaaacacacaaaccgagtctgatatcagcagagcacgtcgccgcaccaaattatctcgtgtgggcaatctattctgtaggaagcgccacaaacag |
207 |
Q |
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| T |
18714902 |
gcaaccaaacacacaaaccgagtcagatatcagcaaagcacgtcgccgcaccaaattatctcgtgtgggcaatctattccgtaggaagcgccacgaacag |
18714803 |
T |
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| Q |
208 |
acacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgt |
307 |
Q |
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| T |
18714802 |
acacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgaactgt |
18714703 |
T |
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| Q |
308 |
gtaacgatgagaag |
321 |
Q |
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| T |
18714702 |
gtaacgatgagaag |
18714689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 46609956 - 46610065
Alignment:
| Q |
212 |
ctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcactgtgtaa |
311 |
Q |
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| T |
46609956 |
ctttgaaggaatatacttatgccatacatcatctaccatcgacctatacaccgggttaccgttgttggtgagaaagtggtaagcttcccgcaccgtgtaa |
46610055 |
T |
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| Q |
312 |
cgatgagaag |
321 |
Q |
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| T |
46610056 |
ccatgagaag |
46610065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 6519328 - 6519443
Alignment:
| Q |
206 |
agacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcact |
305 |
Q |
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||||||||||||||| ||| ||| ||||| |||||| | ||| ||||| |||||| |||| |||| |||| ||||||||| |||||| |||||||| |
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| T |
6519328 |
agacacctttgaaggaatactcttatgccaaacatcatccaccgtcgacttgtccatcgggctaccgttgtaagtgagaaagcagtaagcttcccgcacc |
6519427 |
T |
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| Q |
306 |
gtgtaacgatgagaag |
321 |
Q |
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|||||| || ||||| |
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| T |
6519428 |
ttgtaaccattagaag |
6519443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 9594879 - 9594768
Alignment:
| Q |
17 |
cagaaagacccatccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcaccgcaaccaaa |
116 |
Q |
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|||| |||| || ||||||||||||||| | |||||||||||| | | ||||||||| |||||||||||||| | |||||| || ||||||||||||| | |
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| T |
9594879 |
cagagagactcaaccaatgtaacacatgagtccaaagcaaactgagaatgttgcaactaaaaaataaatgggctacggtttttgattcaccgcaaccaga |
9594780 |
T |
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| Q |
117 |
cacacaaaccga |
128 |
Q |
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| T |
9594779 |
tacacaaaccga |
9594768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 12237946 - 12237631
Alignment:
| Q |
10 |
agcagcacagaaagacccatccaatgtaacacatgggaccaaagcaaactaaaagtgttgcaaccaaaaaataaatgggatgcggtttctggttcaccgc |
109 |
Q |
| |
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|||| |||||| ||||||| ||| ||||||||||| |||||||| | | || || || |||||||| ||||||||| || ||||||| || ||||| |
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| T |
12237946 |
agcaccacagagagacccaaccattgtaacacatgcgaccaaagtacgttgaacgtattacaaccaaagaataaatggaccgcagtttctgtttgaccgc |
12237847 |
T |
|
| Q |
110 |
aaccaaacacacaaaccgagtctgatatcagcagagcacgtcgccgcaccaaattatctcgtgtgggcaatctattctgtaggaagcgccac----aaac |
205 |
Q |
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| ||| |||| ||||| | || ||||| |||| ||| |||||| | ||||||||||||| || | |||| | ||| || | ||||||| | | |
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| T |
12237846 |
agccagacacgcaaacagcgtgagatataagcaaagctcgtcgctgaaccaaattatctctagtagacaatttgttccagagaaggcgccacgcgaacaa |
12237747 |
T |
|
| Q |
206 |
agacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtccaccgggttaccattgttggtgagaaagttgtaagcctcccgcact |
305 |
Q |
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||| ||||| ||||||||| |||| ||||| |||||| |||||| ||||||| ||||| ||||||||||||| |||||||| || | |||||| ||| |
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| T |
12237746 |
agataccttcgaagggatagacttatgccacacatcatctaccaacgacctgcccaccaggttaccattgtttgtgagaaaacgatatgactcccgtact |
12237647 |
T |
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| Q |
306 |
gtgtaacgatgagaag |
321 |
Q |
| |
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||||||| |||||||| |
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| T |
12237646 |
gtgtaaccatgagaag |
12237631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 20122913 - 20122861
Alignment:
| Q |
207 |
gacacctttgaagggataaacttgtgccatacatcaactaccatcgacctgtc |
259 |
Q |
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||||||||||| || |||||||||||||| |||||| | |||| ||||||||| |
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| T |
20122913 |
gacacctttgagggaataaacttgtgccacacatcatcaaccaacgacctgtc |
20122861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 33412288 - 33412252
Alignment:
| Q |
104 |
caccgcaaccaaacacacaaaccgagtctgatatcag |
140 |
Q |
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|||||||||| ||||||||||||||||||| |||||| |
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| T |
33412288 |
caccgcaacctaacacacaaaccgagtctgctatcag |
33412252 |
T |
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