View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_high_19 (Length: 229)
Name: NF4226_high_19
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_high_19 |
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| [»] scaffold0991 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4822336 - 4822114
Alignment:
| Q |
1 |
taccaaaaacaataattcaagtgaaatcttagaccccaaacaacccacgtaaataattcactaaaaacacggtaattcaagtaaaagcctcgaccctaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4822336 |
taccaaaaacaataattcaagtgaaatcttagaccctaaacaacccacgtaaataattcactaaaaacacggtaactcaagtaaaagcctcgaccctaaa |
4822237 |
T |
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| Q |
101 |
ctcagacaaattaaacatataaccaaaaacaataattcaagtgtaatcatgaactccaaactcacacaaattaatctaattcacatatataaaataaaat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822236 |
ctcagacaaattaaacctataaccaaaaacaataattcaagtgtaatcatgaactccaaactcacacaaattaatctaattcacatatataaaataaaat |
4822137 |
T |
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| Q |
201 |
aacatcacagaattcaaaaacag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4822136 |
aacatcacagaattcaaaaacag |
4822114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 4822384 - 4822309
Alignment:
| Q |
73 |
taattcaagtaaaagcctcgaccctaaactcagacaaattaaacatataaccaaaaacaataattcaagtgtaatc |
148 |
Q |
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||||||||| |||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
4822384 |
taattcaagcaaaaccttagaccctaaactcagacaaattaaacatattaccaaaaacaataattcaagtgaaatc |
4822309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 4834184 - 4834115
Alignment:
| Q |
73 |
taattcaagtaaaagcctcgaccctaaactcagacaaattaaacatataaccaaaaacaataattcaagt |
142 |
Q |
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|||||||| ||||| | | ||| ||| |||||||||||||||| |||| ||||||||||| | ||||||| |
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| T |
4834184 |
taattcaactaaaatcttagactctacactcagacaaattaaatatattaccaaaaacaacatttcaagt |
4834115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0991
Description:
Target: scaffold0991; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 1909 - 1978
Alignment:
| Q |
73 |
taattcaagtaaaagcctcgaccctaaactcagacaaattaaacatataaccaaaaacaataattcaagt |
142 |
Q |
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|||||||| ||||| | | ||| ||| |||||||||||||||| |||| ||||||||||| | ||||||| |
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| T |
1909 |
taattcaactaaaatcttagactctacactcagacaaattaaatatattaccaaaaacaacatttcaagt |
1978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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