View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_high_3 (Length: 490)
Name: NF4226_high_3
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 3 - 471
Target Start/End: Original strand, 14379749 - 14380217
Alignment:
| Q |
3 |
gagatggacatcatcacgcttgtttgatgcagcaactatttgaccaacttctactaattagagttttggtaaatttacaactcaacaaacttcggatgcg |
102 |
Q |
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| T |
14379749 |
gagatagacatcataacgcttgtttgatgcagcaactatttgaccaacttctactaattagagttttggtcaatttacaactcaacaaacttcggatgcg |
14379848 |
T |
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| Q |
103 |
agaaataaaatcaacctacataaccaaacatgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcg |
202 |
Q |
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| T |
14379849 |
agaaataaaatcaacctatataaccaaacatgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcg |
14379948 |
T |
|
| Q |
203 |
caaacctcataattgttgtagtcaaggtgagtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcac |
302 |
Q |
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| T |
14379949 |
caaacctcataattgttgtagtcaaggtgagtaagaaaactcaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcac |
14380048 |
T |
|
| Q |
303 |
aattaagctctagcaagaggtagtgagtaaacgatgctgcaaaaaaccactgcaatcagagataaataactaatatattttcctaagcaagggttaacaa |
402 |
Q |
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| T |
14380049 |
aattaagctctagcaagaggtagtgagtaaacgatgctgcaaaaaaccactgcaatcagagataaataactaatatattttcctaagcaagggttaacaa |
14380148 |
T |
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| Q |
403 |
ttgtgtaaaatcacagcccattagctaagactcgagagtatgttcaaattgatggtatagtgtggaacc |
471 |
Q |
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| T |
14380149 |
ttgtgtaaaatcacagcccattagctaagactcgagagtatgttcaaattgatggtatagtgtggaacc |
14380217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 34 - 332
Target Start/End: Complemental strand, 14246463 - 14246164
Alignment:
| Q |
34 |
gcaactatttgaccaacttctactaattagagttttggtaaatttacaactcaacaaacttcgg-atgcgagaaataaaatcaacctacataaccaaaca |
132 |
Q |
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| T |
14246463 |
gcaactatttgatctacttctattaattagagttttggagaatttacagctcagcggacattggcacacgaaaaatacaatcaactcacataaccaaaca |
14246364 |
T |
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| Q |
133 |
tgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggtga |
232 |
Q |
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| T |
14246363 |
tgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacataaatggggcaaacatcgtaattgtcgtattcaaggtga |
14246264 |
T |
|
| Q |
233 |
gtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggtagtgagtaa |
332 |
Q |
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| T |
14246263 |
gtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattgagctctggcgagaggtaatgagtaa |
14246164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 14246122 - 14245993
Alignment:
| Q |
338 |
gctgcaaaaaaccactgcaatcagagataaataact-aatat-attttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactc |
435 |
Q |
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||||||||||||| | | ||||||||| |||||||| ||||| ||||||||||||||||| ||| |||||||||| ||||| ||||||| | ||||||| |
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| T |
14246122 |
gctgcaaaaaaccgccggaatcagagacaaataactcaatattattttcctaagcaagggctaataattgtgtaatctcacaacccattatc-aagactc |
14246024 |
T |
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| Q |
436 |
gagagtatgttcaaattgatggtatagtgtg |
466 |
Q |
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| T |
14246023 |
aagagtatgtttaaactgatggtatagtgtg |
14245993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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