View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_high_5 (Length: 448)
Name: NF4226_high_5
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 45887672 - 45888088
Alignment:
| Q |
15 |
tcatttggagtcaccagcacaacacacagaattcatcacttctggtcaccttcttctctttttcctttctgtcactatcagtcaaataaaaactttctta |
114 |
Q |
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| T |
45887672 |
tcatttggagtcaccagcacaacacacagaattcatcacttctggtcaccttcttctctttttcctttctgtcactatcagtcaaataaaaactttctta |
45887771 |
T |
|
| Q |
115 |
tccaaatattaatattatatttgtaaatctagaagttgccaccttgggaaacaaagccacacgtgtcacacataaactttctgacaaaacctcttttgct |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45887772 |
tccaaatattaatactatatttgtaaatctagaagttgccaccttgggaaacaaagccacacgtgtcacacacaaactttctgacaaaacctcttttgct |
45887871 |
T |
|
| Q |
215 |
aacccaaaataaacccatgtcccacattcaattccttaaccatagtacataccgtgggaaaacactgagctgtcttctcctcattgacagaacactacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887872 |
aacccaaaataaacccatgtcccacattcaattccttaaccatagtacataccgtgggaaaacactgagctgtcttctcctcattgacagaacactacac |
45887971 |
T |
|
| Q |
315 |
cttcgccatgtcactttcctcgttacctcacttcatttttccattctttatatatacatctttcaacttacacactttccctctcaaaataacacacaca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45887972 |
cttcgccatgtcactttcctcgttacctcacttcatttttccattctttatatatacatctttcaacttacacactttccctctcaaaacaacacacaca |
45888071 |
T |
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| Q |
415 |
aaaattactaccaaagt |
431 |
Q |
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||||||||||||||||| |
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| T |
45888072 |
aaaattactaccaaagt |
45888088 |
T |
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