View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_10 (Length: 398)
Name: NF4226_low_10
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 52583398 - 52583038
Alignment:
| Q |
19 |
catcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatt |
118 |
Q |
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| T |
52583398 |
catcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctgcaaagtgttacactgctctggcacttcaagcaatgtctaggcatt |
52583299 |
T |
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| Q |
119 |
tttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgag |
218 |
Q |
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| T |
52583298 |
tttgtagcttaagagatgccataatgtcccaaataaatgctgagaaaagaaaactgtttcaggatgtacctaaaattaatagtggattgtctcaactgag |
52583199 |
T |
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| Q |
219 |
cttatttgagagagataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattagagggtta |
318 |
Q |
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| T |
52583198 |
cttatttgagagagataataatagacagactagaatgtctctccaacaacttggagtcattcaaaaccaacgacaagtttggagacctattagagggtta |
52583099 |
T |
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| Q |
319 |
cctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaag |
379 |
Q |
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| T |
52583098 |
cctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaag |
52583038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 52591105 - 52591059
Alignment:
| Q |
335 |
caattcttcgtgcttggctctttgagcactttcttcatccgtaagtg |
381 |
Q |
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| T |
52591105 |
caatacttcgtgcttggctctttgaacattttcttaatccgtaagtg |
52591059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 43242935 - 43243006
Alignment:
| Q |
310 |
agagggttacctgaaacatctgtagcaattcttcgtgcttggctctttgagcactttcttcatccgtaagtg |
381 |
Q |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| || || || || ||||||||| |
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| T |
43242935 |
agaggattacctgaaagatctgtatctgttcttcgtgcttggctctttgaacatttcctccacccgtaagtg |
43243006 |
T |
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