View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226_low_15 (Length: 346)

Name: NF4226_low_15
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226_low_15
NF4226_low_15
[»] chr2 (2 HSPs)
chr2 (57-339)||(3603834-3604119)
chr2 (232-310)||(6958871-6958952)
[»] chr1 (2 HSPs)
chr1 (57-340)||(6241553-6241836)
chr1 (252-313)||(17245399-17245460)
[»] chr7 (1 HSPs)
chr7 (57-330)||(40739494-40739767)
[»] chr6 (3 HSPs)
chr6 (57-340)||(29466708-29466991)
chr6 (235-297)||(19691438-19691500)
chr6 (267-313)||(21094884-21094930)
[»] chr3 (1 HSPs)
chr3 (267-310)||(54354091-54354134)
[»] chr5 (1 HSPs)
chr5 (267-310)||(39350306-39350349)
[»] scaffold0141 (2 HSPs)
scaffold0141 (267-301)||(31463-31497)
scaffold0141 (267-301)||(34935-34969)
[»] scaffold0049 (2 HSPs)
scaffold0049 (267-301)||(79843-79877)
scaffold0049 (267-301)||(83315-83349)
[»] chr8 (1 HSPs)
chr8 (267-309)||(34643052-34643094)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 57 - 339
Target Start/End: Complemental strand, 3604119 - 3603834
Alignment:
Q  57 ttgattcatggattcaattgttgttgttgttg---attcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgt 153  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3604119 ttgattcatggattcaattgttgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgt 3604020  T
Q  154 ttattgctggatttcattgagggaaacaacactcaatgttcctatgatgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtg 253  Q
    || ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3604019 ttgttgctggattttattgagggaaacaactctcaatgttcctacgatgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtg 3603920  T
Q  254 ttgttgttagaatatttatgtgtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatggtgatgatg 339  Q
    |||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||| ||||||||    
T  3603919 ttgttgttagaagatttatgggtatgatgatattaggtgttgtttttaaaggtagtgatgagagagtgaagatgatgatgatgatg 3603834  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 6958952 - 6958871
Alignment:
Q  232 aattttaactcaatgttatgtgttgtt---gttagaatatttatgtgtatgatgatattaggtgttgttgttaatggtagtg 310  Q
    |||||||| ||||| ||||||||||||   ||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  6958952 aattttaattcaatcttatgtgttgttattgtttgaagatttatgggtatgatgatattaggttttgttgttaatggtagtg 6958871  T

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Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 57 - 340
Target Start/End: Complemental strand, 6241836 - 6241553
Alignment:
Q  57 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgttta 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  6241836 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 6241737  T
Q  157 ttgctggatttcattgagggaaacaacactcaatgttcctatgatgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtgttg 256  Q
    ||||||||||| ||||||||||||||  |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6241736 ttgctggattttattgagggaaacaattctcaatgttcctactgtgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtgttg 6241637  T
Q  257 ttgttagaatatttatgtgtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatggtgatgatgt 340  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||| |||||||||    
T  6241636 ttgttagaagatttatgggtatgatgatattaggtgttgttcttaaatgtagtgatgagagggtgaagatgatgatgatgatgt 6241553  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 17245399 - 17245460
Alignment:
Q  252 tgttgttgttagaatatttatgtgtatgatgatattaggtgttgttgttaatggtagtgatg 313  Q
    |||||||| | ||| |||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  17245399 tgttgttggttgaagatttatgtgtgtgatgatattaggtgttgttgtttatgatagtgatg 17245460  T

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Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 57 - 330
Target Start/End: Original strand, 40739494 - 40739767
Alignment:
Q  57 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgttta 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  40739494 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 40739593  T
Q  157 ttgctggatttcattgagggaaacaacactcaatgttcctatgatgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtgttg 256  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  40739594 ttgctggatttcattgagggaaacaacgctcaatgttcctacgatgaaggtttggatttatgaagatttatgcataattttaactcaatgttttgtgttg 40739693  T
Q  257 ttgttagaatatttatgtgtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatg 330  Q
    ||||||||| ||||||| |||||||||||||| |||||  |||||| ||||||||||||||| |||||||||||    
T  40739694 ttgttagaagatttatgggtatgatgatattatgtgtttctgttaaaggtagtgatgagagggtgaagatgatg 40739767  T

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Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 57 - 340
Target Start/End: Original strand, 29466708 - 29466991
Alignment:
Q  57 ttgattcatggattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatagatttaatcaattgttgttta 156  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  29466708 ttgattcatagattcaattgttgttgttgttgattcatggattcaatcaatttcatttgggtttgaggattttcttatggatttaatcaattgttgtttg 29466807  T
Q  157 ttgctggatttcattgagggaaacaacactcaatgtt-cctatgatgaaggtttggatttatgaagatttatgcagaattttaactcaatgttatgtgtt 255  Q
    ||||||||||||||||||||||||||| ||||||||| || | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29466808 ttgctggatttcattgagggaaacaactctcaatgttcccgacgaggaaggtttgaatttatgaagatttatgcagaattttaactcaatgttatgtgtt 29466907  T
Q  256 gttgttagaatatttatgtgtatgatgatattaggtgttgttgttaatggtagtgatgagaggatgaagatgatggtgatgatgt 340  Q
    | |||||||| ||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| | ||||||||| || ||||||    
T  29466908 g-tgttagaagatttatgagtatgatgatattaagtgttgttgttaaaggtggtgatgagagggtaaagatgatgatggtgatgt 29466991  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 19691500 - 19691438
Alignment:
Q  235 tttaactcaatgttatgtgttgttgttagaatatttatgtgtatgatgatattaggtgttgtt 297  Q
    ||||| ||||| ||||||||||||||| |   |||| || |||||||||||||||||||||||    
T  19691500 tttaattcaatcttatgtgttgttgtttggtgatttttgagtatgatgatattaggtgttgtt 19691438  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 21094930 - 21094884
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgttaatggtagtgatg 313  Q
    ||||||||||  |||||||||||||||||||||| ||| ||||||||    
T  21094930 atttatgtgtgagatgatattaggtgttgttgttgatgatagtgatg 21094884  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 54354091 - 54354134
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgttaatggtagtg 310  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  54354091 atttatgggtatgatgatattaggtgttgttgttagtggtagtg 54354134  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 39350306 - 39350349
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgttaatggtagtg 310  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||    
T  39350306 atttatgggtatgatgatattaagtgttgttgttagtggtagtg 39350349  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 31497 - 31463
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgtta 301  Q
    ||||||| |||||||||||||||||||||||||||    
T  31497 atttatgggtatgatgatattaggtgttgttgtta 31463  T

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Target: scaffold0141; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 34935 - 34969
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgtta 301  Q
    ||||||| |||||||||||||||||||||||||||    
T  34935 atttatgggtatgatgatattaggtgttgttgtta 34969  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 79877 - 79843
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgtta 301  Q
    ||||||| |||||||||||||||||||||||||||    
T  79877 atttatgggtatgatgatattaggtgttgttgtta 79843  T

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Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 83315 - 83349
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgtta 301  Q
    ||||||| |||||||||||||||||||||||||||    
T  83315 atttatgggtatgatgatattaggtgttgttgtta 83349  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 34643094 - 34643052
Alignment:
Q  267 atttatgtgtatgatgatattaggtgttgttgttaatggtagt 309  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||    
T  34643094 atttatgtgtgtgatgatattaggtgttgttgttgatgatagt 34643052  T

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