View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_2 (Length: 678)
Name: NF4226_low_2
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 636; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 8 - 659
Target Start/End: Complemental strand, 9377690 - 9377039
Alignment:
| Q |
8 |
cagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377690 |
cagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcatt |
9377591 |
T |
|
| Q |
108 |
gagcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttatt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377590 |
gagcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttatt |
9377491 |
T |
|
| Q |
208 |
cttttaatatcagcataagtaaatcttgttggtttcattgctctataatcctccaagaagttttctatccttgttatgtcatctcctttcatcttaaaat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377490 |
cttttaatatcagcataagtaaatcttgttggtttcattgctctataatcctccaagaagttttctatccttgttatgtcatctcctttcatcttaaaat |
9377391 |
T |
|
| Q |
308 |
aacgataaatgcgaagaaatccatttgccaatagcagcaaaatcatggaaccaactataacccctgttcatgaaaattacatcacacacataacaaagtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377390 |
aacgataaatgcgaagaaatccatttgccaatagcagcaaaatcatggaaccaactataacccctgttcatgaaaattacatcacacacataacaaagtt |
9377291 |
T |
|
| Q |
408 |
tcaacaactatattttctgttcatcagttagactgatttgttctaaaacttgttatgacccaactcagatattctaaactaatacttcaactcaaattgt |
507 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377290 |
tcaacaactatatcctctgttcatcagttagactgatttgttctaaaacttgttatgacccaactcagatattctaaactaatacttcaactcaaattgt |
9377191 |
T |
|
| Q |
508 |
tgattgtatgtaacaataaatacaagcatgttggcaactttattttaactttatactacgaaaaagcttttacataagtgtgtatcatgattcatgattt |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377190 |
tgattgtatgtaacaataaatacaagcatgttggcaaatttattttaactttatgctacgaaaaagcttttacataagtgtgtatcatgattcatgattt |
9377091 |
T |
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| Q |
608 |
atgatgctaagcacttatactataagctgaaagaatatttcatactagagca |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9377090 |
atgatgctaagcacttatactataagctgaaagaatatttcatactagagca |
9377039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 9236543 - 9236921
Alignment:
| Q |
8 |
cagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcatt |
107 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
9236543 |
cagcacaaaatccgagtaagcgaacaacattgacatgatgaatttttcccatagttccgacttcgttgatgaaatcgtttccatctccttgtgtttcatt |
9236642 |
T |
|
| Q |
108 |
gagcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttatt |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| | || || || |||||||||||| |
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| T |
9236643 |
gagaaccttcacagcaaccaaaatttcttgggagagcatgcctttgaacacggatccatgagctccttctcctaaactctctttgaagccatttgttatt |
9236742 |
T |
|
| Q |
208 |
cttttaatatcagcataagtaaatcttgttggtttcattgctctataatcctccaagaagttttctatccttgttatgtcatctcctttcatcttaaaat |
307 |
Q |
| |
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|| ||||||||||||||||| |||||||| ||||||| ||| || |||||||| ||||| || |||||||||| ||| |||||||||||||||||||||| |
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| T |
9236743 |
ctcttaatatcagcataagtgaatcttgtaggtttcaatgccctgtaatcctctaagaatttctctatccttgctatatcatctcctttcatcttaaaat |
9236842 |
T |
|
| Q |
308 |
aacgataaatgcgaagaaatccatttgccaatagcagcaaaatcatggaaccaactataacccctgttcatgaaaatta |
386 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9236843 |
aacgacaaatgcgaagaaatacatttgccaatagcagcaaaatcatggaaccaactataacccctgttcgtgaaaatta |
9236921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 8979338 - 8979588
Alignment:
| Q |
10 |
gcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattga |
109 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| || || |||||||||||| ||| ||||| | ||||| || || || ||||||| ||| | |||| |
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| T |
8979338 |
gcacagaagccaagcaatcgaacaacattgatgtggtggatttttcccataattcccacttcgctaatgaactctttcccgtctccttctgtattgttga |
8979437 |
T |
|
| Q |
110 |
gcaccttcacagcaaccaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattct |
209 |
Q |
| |
|
| | |||||||||||||| ||| || | || || | ||||| ||||| ||| |||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
8979438 |
gaatcttcacagcaaccagaatctcatttgagagttttcctttaaatacttttccgtgagctccttctcctagtttttccttaaacccatttgtgattct |
8979537 |
T |
|
| Q |
210 |
tttaatatcagcataagtaaatcttgttggtttcattgctctataatcctc |
260 |
Q |
| |
|
||| ||||||||| ||| |||||| || |||| ||||||||||||||| |
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| T |
8979538 |
ttttatatcagcaaaagaaaatctagtaggttgttgtgctctataatcctc |
8979588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 9437920 - 9438168
Alignment:
| Q |
24 |
caagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagca |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | ||||| || ||||| || |||||||| || | || | || |||| ||||||||| |
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| T |
9437920 |
caagcgaacaacattgatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagcc |
9438019 |
T |
|
| Q |
124 |
accaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcat |
223 |
Q |
| |
|
|| | |||||| | |||| | |||||||| || || |||||||||||||| ||||| | |||| ||||| |||||| || || || |||||||||| |
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|
| T |
9438020 |
acaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcctctttatatcagcat |
9438119 |
T |
|
| Q |
224 |
aagtaaatcttgttggtttcattgctctataatcctccaagaagttttc |
272 |
Q |
| |
|
||| ||||||| || || | ||| || |||||||| ||||| ||||| |
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| T |
9438120 |
aagagaatcttgcagggttgagtgccctgtaatcctctaagaacttttc |
9438168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 8862094 - 8862188
Alignment:
| Q |
166 |
tgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatcttgttggtttcattgctctataatcctc |
260 |
Q |
| |
|
|||||||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||| |||||| || ||||| ||||| ||||||||| |
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|
| T |
8862094 |
tgagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataagaaaatctagtaggtttttgtgctcgataatcctc |
8862188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 8962253 - 8962159
Alignment:
| Q |
31 |
acaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagcaac |
125 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||| |||||||| ||||| || | |||||||||| ||| | ||| |||| |||||||||||| |
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| T |
8962253 |
acaacattaacatgatggatttttcccatagttcctacttcatttatgaactctctcccatctccttctgtattattaagcatcttcacagcaac |
8962159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 9420837 - 9421085
Alignment:
| Q |
24 |
caagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacagca |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | ||||| || ||||| || |||||||| || | || | || |||| ||||||||| |
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|
| T |
9420837 |
caagcgaacaacattgatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagcc |
9420936 |
T |
|
| Q |
124 |
accaaaatttcttgggatagcatgcctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcat |
223 |
Q |
| |
|
|| | |||||| | |||| | |||||||| || || |||||||||||||| ||||| | |||| ||||| |||||| || || || |||||| ||| |
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|
| T |
9420937 |
acaagaatttcattagataatttacctttgaaaactgcaccatgagctccttcacctaactcttccctaaaattatttgtaatcctctttatatcaacat |
9421036 |
T |
|
| Q |
224 |
aagtaaatcttgttggtttcattgctctataatcctccaagaagttttc |
272 |
Q |
| |
|
||| ||||||| || || | ||| || |||||||| ||||| ||||| |
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|
| T |
9421037 |
aagagaatcttgcagggttgagtgccctgtaatcctctaagaacttttc |
9421085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 8926909 - 8926798
Alignment:
| Q |
22 |
agcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctccttgtgtctcattgagcaccttcacag |
121 |
Q |
| |
|
||||| ||||||||||| | |||||| |||||||||||||||| || ||||| ||||| || | |||||||| | ||| | | | |||| |||||||| |
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|
| T |
8926909 |
agcaaccgaacaacattaacatgatggatttttcccatagttcccacctcatttatgaactcactcccatctccctctgtattactaagcatcttcacag |
8926810 |
T |
|
| Q |
122 |
caaccaaaattt |
133 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
8926809 |
caaccataattt |
8926798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 9466869 - 9466956
Alignment:
| Q |
8 |
cagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaaatcgtttccatctcc |
95 |
Q |
| |
|
|||| ||||| || ||||| || |||||||| | |||||| |||||||||||||||| |||||||| ||||| || || |||||||| |
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| T |
9466869 |
cagcgcagaagccaagcaaacggacaacattaagatgatggatttttcccatagttcccacttcatttatgaactccttaccatctcc |
9466956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 8939335 - 8939277
Alignment:
| Q |
22 |
agcaagcgaacaacattgaaatgatgaatttttcccatagttcggacttcattgatgaa |
80 |
Q |
| |
|
||||| || |||||||| | ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8939335 |
agcaaccggacaacattaacatgatgaatttttcccatagttcccacttcatttatgaa |
8939277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 9125654 - 9125739
Alignment:
| Q |
148 |
cctttgaatacggctccatgagctccttctcctaaattttccttaaaaccatttgttattcttttaatatcagcataagtaaatct |
233 |
Q |
| |
|
||||| || |||| ||| || |||||||||||||| ||||||||||| ||| | || |||||||| ||||||| ||| | |||||| |
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|
| T |
9125654 |
cctttaaacacggttccgtgtgctccttctcctaacttttccttaaacccactagtgattctttttatatcagaatatgaaaatct |
9125739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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