View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_20 (Length: 302)
Name: NF4226_low_20
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 6622677 - 6622843
Alignment:
| Q |
124 |
caacagcttttgatgtaattgttattatttttacataacttatgtcaccgtttgagcactctaataataatatacaaaacctgcttcgacattcacttgc |
223 |
Q |
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| T |
6622677 |
caacagcttttgatgtaattgttattatttttacataacttatgtcaccgttggagcactctaataataatatacaaaatctgcttctacattcacttgc |
6622776 |
T |
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| Q |
224 |
agtataaactccatattgaatttgcccttgctttcataggcatcaatgaaaatttcaggaagatcct |
290 |
Q |
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| T |
6622777 |
agtataaactccatattgaatttgcccttactttcataggcatcaatgaaaatttcaggaagatcct |
6622843 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 6622555 - 6622595
Alignment:
| Q |
3 |
atcaaatttgatttcatcctaatgttgacatttctgtccaa |
43 |
Q |
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| T |
6622555 |
atcaaatttgatttcatcctaatgttgacatttctgtccaa |
6622595 |
T |
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