View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226_low_21 (Length: 293)

Name: NF4226_low_21
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226_low_21
NF4226_low_21
[»] chr2 (4 HSPs)
chr2 (154-284)||(10035137-10035267)
chr2 (154-284)||(10095506-10095636)
chr2 (18-109)||(10035046-10035137)
chr2 (18-109)||(10095415-10095506)
[»] chr1 (1 HSPs)
chr1 (253-285)||(6901999-6902031)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 10035137 - 10035267
Alignment:
Q  154 gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035137 gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt 10035236  T
Q  254 tgtgcgtcttgcatatactcgtcgagaataa 284  Q
    |||||||||||||||||||||||||||||||    
T  10035237 tgtgcgtcttgcatatactcgtcgagaataa 10035267  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 154 - 284
Target Start/End: Original strand, 10095506 - 10095636
Alignment:
Q  154 gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10095506 gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttcccttttcttgccgcgagtggt 10095605  T
Q  254 tgtgcgtcttgcatatactcgtcgagaataa 284  Q
    |||||||||||||||||||||||||||||||    
T  10095606 tgtgcgtcttgcatatactcgtcgagaataa 10095636  T

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Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 10035046 - 10035137
Alignment:
Q  18 ttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggcagtgaggctgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035046 ttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggcagtgaggctgg 10035137  T

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Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 10095415 - 10095506
Alignment:
Q  18 ttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggcagtgaggctgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10095415 ttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtgcgcctgtttggattttaggcagtgaggctgg 10095506  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 6901999 - 6902031
Alignment:
Q  253 ttgtgcgtcttgcatatactcgtcgagaataat 285  Q
    |||||||||||||||||||||| ||||||||||    
T  6901999 ttgtgcgtcttgcatatactcgacgagaataat 6902031  T

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