View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226_low_23 (Length: 254)

Name: NF4226_low_23
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226_low_23
NF4226_low_23
[»] chr6 (12 HSPs)
chr6 (1-250)||(2755311-2755560)
chr6 (1-84)||(12221970-12222053)
chr6 (1-84)||(29355910-29355993)
chr6 (1-84)||(2166465-2166548)
chr6 (1-84)||(2178098-2178181)
chr6 (1-76)||(1346963-1347036)
chr6 (1-76)||(1354818-1354891)
chr6 (11-76)||(33138842-33138907)
chr6 (2-76)||(28007628-28007700)
chr6 (2-84)||(14553511-14553593)
chr6 (1-70)||(8409242-8409311)
chr6 (49-77)||(7947432-7947460)
[»] chr1 (27 HSPs)
chr1 (1-84)||(27201669-27201752)
chr1 (3-84)||(30395781-30395862)
chr1 (1-84)||(35005145-35005228)
chr1 (1-110)||(32632586-32632692)
chr1 (1-77)||(2435847-2435923)
chr1 (5-77)||(17470406-17470478)
chr1 (1-84)||(10668247-10668330)
chr1 (1-76)||(18724606-18724681)
chr1 (1-84)||(18944665-18944748)
chr1 (1-76)||(25468324-25468399)
chr1 (1-80)||(35117825-35117904)
chr1 (3-84)||(20004145-20004226)
chr1 (1-72)||(34725163-34725232)
chr1 (1-76)||(38478343-38478416)
chr1 (49-84)||(18742012-18742047)
chr1 (49-84)||(19932808-19932843)
chr1 (3-73)||(6925124-6925194)
chr1 (11-85)||(22324925-22324998)
chr1 (3-73)||(46991828-46991898)
chr1 (3-76)||(23768381-23768454)
chr1 (1-76)||(35253248-35253321)
chr1 (1-76)||(47214533-47214606)
chr1 (1-76)||(41319867-41319942)
chr1 (1-76)||(46248014-46248089)
chr1 (1-76)||(12126898-12126971)
chr1 (1-77)||(22327121-22327197)
chr1 (13-77)||(45264460-45264524)
[»] chr7 (28 HSPs)
chr7 (1-78)||(12473303-12473380)
chr7 (1-84)||(43557471-43557554)
chr7 (3-84)||(46354195-46354276)
chr7 (3-84)||(47716460-47716541)
chr7 (1-76)||(19426950-19427025)
chr7 (3-84)||(42805525-42805606)
chr7 (1-76)||(21172070-21172143)
chr7 (1-76)||(2541080-2541155)
chr7 (1-84)||(22699023-22699106)
chr7 (1-84)||(35203438-35203521)
chr7 (1-109)||(32233165-32233270)
chr7 (1-76)||(11741794-11741867)
chr7 (1-73)||(18512517-18512588)
chr7 (1-77)||(29907418-29907494)
chr7 (1-76)||(42391161-42391234)
chr7 (6-76)||(2662996-2663064)
chr7 (1-76)||(11617649-11617724)
chr7 (1-76)||(27629633-27629708)
chr7 (1-95)||(14732865-14732958)
chr7 (3-76)||(7879639-7879712)
chr7 (1-77)||(7644955-7645031)
chr7 (1-77)||(16341277-16341353)
chr7 (1-76)||(32758260-32758333)
chr7 (1-80)||(5180214-5180293)
chr7 (1-76)||(33871971-33872045)
chr7 (1-76)||(48123545-48123620)
chr7 (2-76)||(23419735-23419809)
chr7 (3-76)||(42798670-42798743)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-84)||(58976-59059)
[»] chr5 (17 HSPs)
chr5 (1-84)||(38879580-38879663)
chr5 (3-84)||(4619159-4619240)
chr5 (3-76)||(24448891-24448964)
chr5 (1-76)||(32703423-32703496)
chr5 (1-84)||(43334201-43334285)
chr5 (1-84)||(27328751-27328834)
chr5 (1-96)||(42924875-42924970)
chr5 (10-84)||(13801822-13801896)
chr5 (3-76)||(41014320-41014392)
chr5 (1-76)||(8170045-8170118)
chr5 (1-76)||(35710312-35710385)
chr5 (3-76)||(1405188-1405261)
chr5 (1-77)||(28516494-28516570)
chr5 (1-60)||(22025542-22025601)
chr5 (1-67)||(37024626-37024690)
chr5 (51-84)||(20135653-20135686)
chr5 (12-76)||(19143004-19143067)
[»] chr3 (32 HSPs)
chr3 (2-84)||(29366775-29366857)
chr3 (1-95)||(8247731-8247825)
chr3 (2-84)||(46421090-46421172)
chr3 (11-84)||(10795478-10795551)
chr3 (3-76)||(40272873-40272946)
chr3 (1-84)||(13628845-13628928)
chr3 (1-84)||(45139531-45139614)
chr3 (3-84)||(13730657-13730738)
chr3 (1-76)||(1217111-1217184)
chr3 (12-84)||(14986989-14987061)
chr3 (1-77)||(34420704-34420780)
chr3 (1-75)||(26573148-26573222)
chr3 (1-78)||(516430-516507)
chr3 (4-76)||(6411883-6411954)
chr3 (3-75)||(45948900-45948972)
chr3 (1-77)||(54374406-54374482)
chr3 (2-76)||(7696948-7697020)
chr3 (1-80)||(9607224-9607303)
chr3 (49-84)||(45786269-45786304)
chr3 (6-76)||(16735467-16735536)
chr3 (11-76)||(31592880-31592943)
chr3 (3-73)||(54032623-54032693)
chr3 (3-76)||(4495725-4495798)
chr3 (1-74)||(33926104-33926176)
chr3 (1-76)||(22122978-22123051)
chr3 (1-77)||(53996626-53996702)
chr3 (49-84)||(353404-353439)
chr3 (13-76)||(12914096-12914159)
chr3 (49-84)||(49013528-49013563)
chr3 (11-76)||(22609797-22609861)
chr3 (1-76)||(39203537-39203610)
chr3 (1-76)||(52428538-52428614)
[»] chr2 (21 HSPs)
chr2 (1-84)||(10543697-10543780)
chr2 (1-84)||(14530317-14530400)
chr2 (1-84)||(24200678-24200761)
chr2 (3-76)||(8455377-8455450)
chr2 (1-76)||(10546161-10546237)
chr2 (1-83)||(7214533-7214615)
chr2 (1-85)||(19614991-19615075)
chr2 (1-76)||(23397765-23397838)
chr2 (1-76)||(12023980-12024054)
chr2 (3-127)||(17623565-17623685)
chr2 (1-76)||(99326-99399)
chr2 (4-76)||(22371059-22371128)
chr2 (3-84)||(5841029-5841110)
chr2 (3-76)||(17668003-17668076)
chr2 (1-76)||(9671180-9671253)
chr2 (1-76)||(21779322-21779395)
chr2 (3-75)||(40416933-40417005)
chr2 (1-76)||(19977775-19977850)
chr2 (1-75)||(23145760-23145834)
chr2 (1-75)||(23557550-23557624)
chr2 (3-76)||(14444730-14444802)
[»] chr8 (33 HSPs)
chr8 (3-84)||(7136582-7136663)
chr8 (1-84)||(20284124-20284209)
chr8 (1-83)||(39461050-39461132)
chr8 (3-84)||(6760823-6760904)
chr8 (3-76)||(29521746-29521819)
chr8 (3-76)||(36720797-36720870)
chr8 (1-76)||(12670311-12670384)
chr8 (1-84)||(21070752-21070838)
chr8 (1-80)||(44781563-44781642)
chr8 (3-84)||(26954133-26954215)
chr8 (3-73)||(28817690-28817760)
chr8 (6-75)||(8484000-8484069)
chr8 (1-74)||(35105922-35105995)
chr8 (3-76)||(44530150-44530223)
chr8 (1-76)||(18164821-18164895)
chr8 (1-75)||(20869560-20869632)
chr8 (13-84)||(25250533-25250604)
chr8 (49-84)||(43942371-43942406)
chr8 (1-76)||(389642-389719)
chr8 (11-76)||(5135350-5135415)
chr8 (3-76)||(8897825-8897898)
chr8 (3-76)||(13160703-13160775)
chr8 (3-76)||(45071266-45071338)
chr8 (1-127)||(17823575-17823697)
chr8 (1-76)||(30454158-30454231)
chr8 (49-84)||(20869970-20870005)
chr8 (1-76)||(31457172-31457246)
chr8 (1-75)||(22598156-22598230)
chr8 (3-77)||(44742579-44742653)
chr8 (7-76)||(5689636-5689705)
chr8 (3-76)||(35261680-35261753)
chr8 (47-75)||(26457774-26457802)
chr8 (1-77)||(42083759-42083835)
[»] chr4 (28 HSPs)
chr4 (3-95)||(16408645-16408737)
chr4 (1-76)||(20224983-20225056)
chr4 (3-84)||(21646965-21647046)
chr4 (1-76)||(9832374-9832447)
chr4 (1-76)||(48598886-48598959)
chr4 (1-76)||(17043455-17043530)
chr4 (1-76)||(47443956-47444031)
chr4 (1-75)||(19027847-19027921)
chr4 (3-76)||(5648260-5648332)
chr4 (1-76)||(47528591-47528664)
chr4 (1-76)||(6430687-6430761)
chr4 (2-84)||(16911562-16911644)
chr4 (1-76)||(11054209-11054282)
chr4 (1-76)||(29207959-29208032)
chr4 (1-76)||(39077857-39077930)
chr4 (49-84)||(20225121-20225156)
chr4 (1-76)||(30639379-30639453)
chr4 (1-76)||(35567169-35567244)
chr4 (1-84)||(44363185-44363268)
chr4 (14-76)||(9987895-9987957)
chr4 (13-83)||(10660415-10660485)
chr4 (13-83)||(10874560-10874630)
chr4 (19-77)||(20639719-20639777)
chr4 (2-95)||(54730249-54730343)
chr4 (49-78)||(25343234-25343263)
chr4 (1-77)||(7038052-7038127)
chr4 (52-84)||(30352635-30352667)
chr4 (49-77)||(54175110-54175138)
[»] scaffold0057 (1 HSPs)
scaffold0057 (3-76)||(46832-46905)
[»] scaffold1176 (1 HSPs)
scaffold1176 (1-76)||(1648-1721)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-75)||(4156-4230)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-76)||(11130-11203)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-76)||(10111-10184)
scaffold0187 (1-76)||(20439-20512)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-76)||(30578-30651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-76)||(48695-48760)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2755560 - 2755311
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttcccaaatc 100  Q
    |||||||| | |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  2755560 gaaaggtcgtaggttcaagtcttgcaaacatcctcttataccaaaaataggctaaggctgcgtacaatacaccaaaaatggtgggagtccttcccaaatc 2755461  T
Q  101 gtgcatatgcacggaagctttagtgcataggttgtccttataaacataaaacacatgtatactaacttagcttaattacttatccaattatatataggca 200  Q
     ||||||||| ||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2755460 ctgcatatgcgcgggagctttagtgcaccggttgcccttataaacataaaacacatgtatactaacttagcttaattacttatccaattatatataggta 2755361  T
Q  201 tcaaataggccccagatgtagacatcatatttttcttgtgccctatgctt 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  2755360 tcaaataggccctagatgtagacatcatatttttcttgtgccctaagctt 2755311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12222053 - 12221970
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| ||||||||||| || ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  12222053 gaaaggtcacgggttcaagtcttggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 12221970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29355993 - 29355910
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| ||||||||   | | | ||||||||||||||||||||||||||| ||||||||    
T  29355993 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaagaaacagggtaaggctgcgtacaatacaccaataatggtgg 29355910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2166548 - 2166465
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||| ||||| ||||||||||||||||| ||||||||    
T  2166548 gaaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaatacaggataaggttgcgtacaatacaccaataatggtgg 2166465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2178181 - 2178098
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||| ||||| ||||||||||||||||| ||||||||    
T  2178181 gaaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaatacaggataaggttgcgtacaatacaccaataatggtgg 2178098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1346963 - 1347036
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| || |||||   |||||  |||||||||||||||||||||||||||    
T  1346963 gaaaggtcacgggttcaagtcctggaaacagccacttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 1347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1354891 - 1354818
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  1354891 gaaaggtcactggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 1354818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 33138842 - 33138907
Alignment:
Q  11 gggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||| ||||| |||||||||  ||| | || ||||||| |||||||||||||||||    
T  33138842 gggttcaagtcctggaaacaacctcttgtataaaaaacagagtaaggccgcgtacaatacaccaaa 33138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 28007628 - 28007700
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||| |||||||||||||| ||| | ||||||||   |||||  |||| ||||||||||||||||||||||    
T  28007628 aaaggtcacgggttcaagtcctggaaagagcctcttgtgtaaaaca--gggtcaggctgcgtacaatacaccaaa 28007700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 14553511 - 14553593
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||  ||||||||||||| ||| | | ||||||   ||| |||||||||||||| ||| |||||||||||| ||||||    
T  14553511 aaaggtcacaggttcaagtcctggaaatagcttcttgtgtaaaaaatagggtaaggctgtgtataatacaccaaaactggtgg 14553593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8409242 - 8409311
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatac 70  Q
    ||||||||| || ||||||||||| ||||  ||||||||   ||| | ||||||||||||||||||||||    
T  8409242 gaaaggtcacggattcaagtcctggaaactgcctcttgtgtaaaaaacagggtaaggctgcgtacaatac 8409311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 7947460 - 7947432
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||||||||||||||||||||||||||    
T  7947460 agggtaaggctgcgtacaatacaccaaaa 7947432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27201669 - 27201752
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||||||||||||||||| ||||| ||||||||  || | | ||||||||||||||||||||||||||||||||||||    
T  27201669 gaaaggtcatgggttcaagtcctggaaacagcctcttgtgtcagaaacagggtaaggctgcgtacaatacaccaaaaatggtgg 27201752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 30395862 - 30395781
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  30395862 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 30395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35005145 - 35005228
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| ||||||||||| || ||||| ||||||||   ||| | ||||||||||||| ||||||||||||||||||||||    
T  35005145 gaaaggtcacgggttcaagtcttgaaaacagcctcttgtgtaaaaaacagggtaaggctgcatacaatacaccaaaaatggtgg 35005228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 32632692 - 32632586
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttcccaaatc 100  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||||||||||||||||  ||||||||| |  |||||||||| |    
T  32632692 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacacc--aaatggtgggaccccttcccaaacc 32632596  T
Q  101 gtgcatatgc 110  Q
     |||||||||    
T  32632595 ctgcatatgc 32632586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2435923 - 2435847
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||||||||| ||||| |||| |||   ||| |||||||||| ||||||||||||||||||||    
T  2435923 gaaaggtcacgggttcaagtcctggaaacagcctcctgtgtgaaaaatagggtaagcctgcgtacaatacaccaaaa 2435847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 17470478 - 17470406
Alignment:
Q  5 ggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||||||||||||||||  ||||| ||||||||   ||| | |||||||||||||||||||||||||||||    
T  17470478 ggtcatgggttcaagtcctagaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaa 17470406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10668247 - 10668330
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | | ||||||| ||||||||||||||||| ||||||||    
T  10668247 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacaaggtaaggttgcgtacaatacaccaataatggtgg 10668330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 18724681 - 18724606
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||||||||||||||    
T  18724681 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgtgtacaatacaccaaa 18724606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 18944665 - 18944748
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||  |||||||| |||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  18944665 gaaaggtcacaggttcaaggcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaacaatggtgg 18944748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 25468399 - 25468324
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||||| ||||| ||||||||   |||   ||||||||| ||||||||||||||||||    
T  25468399 gaaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaaatcagggtaaggttgcgtacaatacaccaaa 25468324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35117904 - 35117825
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatg 80  Q
    ||||||||| |||||||||||||| ||| | ||||||||   ||| | |||||||||||| |||||||||||||||||||    
T  35117904 gaaaggtcacgggttcaagtcctggaaatagcctcttgtgtaaaatacagggtaaggctgtgtacaatacaccaaaaatg 35117825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 20004226 - 20004145
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||| ||   ||| | | ||||||||||||||||||||||||| ||||||||    
T  20004226 aaggtcacgggttcaagtcctggaaacagcctctcgtgtaaaaaacaaggtaaggctgcgtacaatacaccaataatggtgg 20004145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34725232 - 34725163
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacac 72  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  ||||||||||||||||||||||||    
T  34725232 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--agggtaaggctgcgtacaatacac 34725163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 38478416 - 38478343
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||  ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  38478416 gaaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 38478343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 18742047 - 18742012
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  18742047 agggtaaggctgcgtacaatacaccaaaaatggtgg 18742012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 19932843 - 19932808
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  19932843 agggtaaggctgcgtacaatacaccaaaaatggtgg 19932808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 6925124 - 6925194
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacc 73  Q
    ||||||| |||||||||||||| ||| | ||||||||   ||| |||||||||||||||| ||||||||||    
T  6925124 aaggtcacgggttcaagtcctggaaatagcctcttgtgtaaaaaatagggtaaggctgcggacaatacacc 6925194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 22324925 - 22324998
Alignment:
Q  11 gggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgga 85  Q
    ||||||||||| || ||||| ||||||||   ||| | ||||||||||||| |||||||||||||||||||||||    
T  22324925 gggttcaagtcttggaaacagcctcttgtgtaaaa-acagggtaaggctgcatacaatacaccaaaaatggtgga 22324998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 46991828 - 46991898
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacc 73  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||| ||||||||||||    
T  46991828 aaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaaaacagggtaaggctgtgtacaatacacc 46991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 23768454 - 23768381
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||  |||||||||| || ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  23768454 aaggtcacaggttcaagtcatggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaa 23768381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35253321 - 35253248
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||| ||| |||||||||||||  ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  35253321 gaaagatcacgggttcaagtcctcgaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 35253248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47214533 - 47214606
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| |||||  |||||||   |||||  |||||||| ||||||||||||||||||    
T  47214533 gaaaggtcacgggttcaagtcctggaaacagtctcttgtttaaaaca--gggtaaggttgcgtacaatacaccaaa 47214606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41319942 - 41319867
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  |||| |||||||| |||||  |||||||   ||| | ||||||||||||||||||||||||||||    
T  41319942 gaaaggtcacaggtttaagtcctggaaacagtctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaa 41319867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 46248089 - 46248014
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||| |||| ||||||||||| || ||||| ||||||||   ||| | |||||||| |||||||||||||||||||    
T  46248089 gaaatgtcacgggttcaagtcttggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaa 46248014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12126971 - 12126898
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| ||||| |||| ||| ||||| | ||||||   |||||  |||||||||||||||||||||||||||    
T  12126971 gaaaggtcacgggtttaagttctggaaacagcttcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 12126898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22327121 - 22327197
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||  |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||| || ||||||||    
T  22327121 gaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaaaaacagggtaaggctgtgtacgatgcaccaaaa 22327197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 45264524 - 45264460
Alignment:
Q  13 gttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||||||||| ||||| |||||||| | ||| | || ||||||||| || |||||||||||||    
T  45264524 gttcaagtcctggaaacaacctcttgtgcaaaaaacagagtaaggctgtgtgcaatacaccaaaa 45264460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12473303 - 12473380
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaa 78  Q
    |||||||||||||||||||||||||||||| ||||||||  |||| | ||||||||| ||||||||||||||||||||    
T  12473303 gaaaggtcatgggttcaagtcctgcaaacaacctcttgtgtcaaaaacagggtaaggatgcgtacaatacaccaaaaa 12473380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43557471 - 43557554
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||||||||||||||||| ||||| ||||||||   ||| | || |||||||||||||||||||||||| ||||||||    
T  43557471 gaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaaaaacagagtaaggctgcgtacaatacaccaataatggtgg 43557554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 46354195 - 46354276
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  46354195 aaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 46354276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 47716460 - 47716541
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  47716460 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 47716541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19427025 - 19426950
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| |||||||||| |||||||||||||||||||    
T  19427025 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaatagggtaagactgcgtacaatacaccaaa 19426950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 42805525 - 42805606
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||||||||||||| ||||||||    
T  42805525 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgtgtacaatacaccaataatggtgg 42805606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21172143 - 21172070
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  21172143 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 21172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2541155 - 2541080
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||| ||||||||||    
T  2541155 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtactatacaccaaa 2541080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22699106 - 22699023
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||||| ||| |  |||||||   ||| | |||||||| |||||||||||||||||||||||||||    
T  22699106 gaaaggttatgggttcaagtcctggaaatagtctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaaaatggtgg 22699023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35203438 - 35203521
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| |||||| |||||||   ||| | ||| |||| |||||||||||| ||||||||||||||    
T  35203438 gaaaggtcacgggttcaagtcctggaaacattctcttgtgtaaaaaacaggataagactgcgtacaatataccaaaaatggtgg 35203521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32233270 - 32233165
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttcccaaatc 100  Q
    |||||||||||||||||||||||| ||||| ||||||||   ||| | |||||||||| ||||| | ||||||  ||||||||| | ||||||||||| |    
T  32233270 gaaaggtcatgggttcaagtcctggaaacaacctcttgt-gtaaaaacagggtaaggcagcgtatattacacc--aaatggtgggattccttcccaaacc 32233174  T
Q  101 gtgcatatg 109  Q
     ||||||||    
T  32233173 ctgcatatg 32233165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11741794 - 11741867
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||||| ||||| | ||| ||   |||  |||||||||||||||||||||||||||||    
T  11741794 gaaaggtcatgggttcaagtcctgaaaacagcttctagtgtaaaa--tagggtaaggctgcgtacaatacaccaaa 11741867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18512588 - 18512517
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacc 73  Q
    ||||||||| |||||||||||||| ||||| | ||||||   ||| |||||||||||||||||||||||||||    
T  18512588 gaaaggtcacgggttcaagtcctggaaacaacatcttgtgtaaaa-atagggtaaggctgcgtacaatacacc 18512517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29907418 - 29907494
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||||||||  ||||| ||||||||   ||| |||| |||||||||||| |||||||||||||    
T  29907418 gaaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaaaatagtgtaaggctgcgttcaatacaccaaaa 29907494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42391234 - 42391161
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| | ||||||   |||||  |||||||||||||||||||||||||||    
T  42391234 gaaaggtcacgggttcaagtcctggaaacagcttcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 42391161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 2663064 - 2662996
Alignment:
Q  6 gtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||| ||||||||||||| ||||| ||||||||    || ||||||||||||||||||||||||||||||    
T  2663064 gtcataggttcaagtcctggaaacagcctcttgt--gtaaaatagggtaaggctgcgtacaatacaccaaa 2662996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11617724 - 11617649
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| ||||| ||||||||   ||| | |||||||| |||||||||||||||||||    
T  11617724 gaaaggtcacaggttcaagtcctggaaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaa 11617649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27629633 - 27629708
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||| |||||| |||||||||||    
T  27629633 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggttgcgtaaaatacaccaaa 27629708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14732958 - 14732865
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttccc 95  Q
    |||| ||||||||||||||||||| ||||| ||||   |   ||| | ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  14732958 gaaaagtcatgggttcaagtcctggaaacagcctcccatgtaaaaaacagggtaaggctgcgt-caatacaccaaaaatggtgaaactccttccc 14732865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 7879639 - 7879712
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| |||||  |||||||   ||| | | ||||||||||||||||||||||||||    
T  7879639 aaggtcacgggttcaagtcctggaaacaatctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaa 7879712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7644955 - 7645031
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||   ||||||||||||||||||    
T  7644955 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaagatagcgtacaatacaccaaaa 7645031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16341277 - 16341353
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||||| ||  ||||| ||||||||   ||| | ||||||||||| |||||||||||||||||    
T  16341277 gaaaggtcacgggttcaagttctagaaacagcctcttgtgtaaaaaacagggtaaggctacgtacaatacaccaaaa 16341353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32758260 - 32758333
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| ||||| ||||||||   |||||  ||||||||||| |||||||||||||||    
T  32758260 gaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgtgtacaatacaccaaa 32758333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 5180293 - 5180214
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatg 80  Q
    ||||||||| |||||||| | ||| ||||| ||||||||  |||| | |||||||| ||| |||||| ||||||||||||    
T  5180293 gaaaggtcaagggttcaacttctggaaacagcctcttgtgtcaaaaacagggtaagactgtgtacaacacaccaaaaatg 5180214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33872045 - 33871971
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||  |||||||||||||| ||||| ||||||||   ||| | ||| ||||||||||||||||||||||||    
T  33872045 gaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaaa-acaggataaggctgcgtacaatacaccaaa 33871971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48123620 - 48123545
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||||| ||||| ||||||||   ||  | |||||||  |||| ||||||||||||||    
T  48123620 gaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaataacagggtaaaactgcatacaatacaccaaa 48123545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 23419809 - 23419735
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||  ||||||||| ||| ||||| ||||||||   ||| | |||||||| |||||||||||||||||||    
T  23419809 aaaggtcacaggttcaagttctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaa 23419735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 42798670 - 42798743
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| ||||||||||| || |||||  |||||||   ||| | | ||||||||||||||||||||||||||    
T  42798670 aaggtcacgggttcaagtcttggaaacagtctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaa 42798743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 58976 - 59059
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| |||||||||  ||| | |||||||| |||||||||||||||||||||||||||    
T  58976 gaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaacagggtaagactgcgtacaatacaccaaaaatggtgg 59059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 38879580 - 38879663
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| |||||||||  ||| | ||||||||||||||||||||||||||| ||||||||    
T  38879580 gaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 38879663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 4619240 - 4619159
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||| | ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  4619240 aaggtcacgggttcaagtcctggaaatagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 4619159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 24448891 - 24448964
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||| ||||   ||| ||||||||||||||||||||||||||||||    
T  24448891 aaggtcacgggttcaagtcctggaaacagccttttgtgtaaaaaatagggtaaggctgcgtacaatacaccaaa 24448964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32703423 - 32703496
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  32703423 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 32703496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43334201 - 43334285
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacat-agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| |||| |||   ||| |  ||||||||||||||||||||||||||||||||||||    
T  43334201 gaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgg 43334285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27328751 - 27328834
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||  ||||||||||||| |||||  |||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  27328751 gaaaggtcacaggttcaagtcctggaaacagtctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 27328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 42924970 - 42924875
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttccca 96  Q
    ||||||||| | |||||||||||| ||||| | ||||||   ||| | ||||||||| |||||||||||||||||||||| |||||  ||||||||    
T  42924970 gaaaggtcacgagttcaagtcctgaaaacaacatcttgtgtaaaaaacagggtaaggttgcgtacaatacaccaaaaatgatggaatcccttccca 42924875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 13801896 - 13801822
Alignment:
Q  10 tgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||| || || ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  13801896 tgggttcaagtcctggaagcagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 13801822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 41014320 - 41014392
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  41014320 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 41014392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8170118 - 8170045
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||| ||||   |||||  |||||||||||||||||||||||||||    
T  8170118 gaaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 8170045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35710312 - 35710385
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||    || ||||||||||||||||| ||||||||||||    
T  35710312 gaaaggtcacgggttcaagtcctggaaacagcctcttgt--gtaaaatagggtaaggctgcgttcaatacaccaaa 35710385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 1405188 - 1405261
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| |||||| ||  ||| |||| |||||  ||||||||||||||||||    
T  1405188 aaggtcacgggttcaagtcctggaaacaacctcttatataaaaaatagagtaagtttgcgtacaatacaccaaa 1405261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28516570 - 28516494
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| ||||||||||| || ||||||||||||||   ||| | ||| || |||||||||||||||| |||||    
T  28516570 gaaaggtcacgggttcaagtcttggaaacatcctcttgtgtaaaaaacaggctagggctgcgtacaatacatcaaaa 28516494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22025542 - 22025601
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctg 60  Q
    |||||||||||||||||||||||| ||||| ||||||||   ||| | ||||||||||||    
T  22025542 gaaaggtcatgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctg 22025601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37024690 - 37024626
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaa 67  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  |||||||||||||||||||    
T  37024690 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--agggtaaggctgcgtacaa 37024626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 20135653 - 20135686
Alignment:
Q  51 ggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||| ||||||||    
T  20135653 ggtaaggctgcgtacaatacaccaataatggtgg 20135686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 19143067 - 19143004
Alignment:
Q  12 ggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||||||| ||||| ||||||||   ||| | |||||||||||||||||| |||||||||    
T  19143067 ggttcaagtcctggaaacaacctcttgtgtaaaa-acagggtaaggctgcgtacagtacaccaaa 19143004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 29366857 - 29366775
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||| |||||||||||||| ||||| |||||||||  ||| | ||||||||||||||||||||||||||| ||||||||    
T  29366857 aaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 29366775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8247825 - 8247731
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttccc 95  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||| ||||||||||||||||| |||||||| | ||||||||    
T  8247825 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggttgcgtacaatacaccaataatggtgggactccttccc 8247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 46421172 - 46421090
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  46421172 aaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 46421090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 10795551 - 10795478
Alignment:
Q  11 gggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||||||||||    
T  10795551 gggttcaagtcctggaaacagcctcttgtgtaaaagacagggtaaggctgcgtacaatacaccaaaaatggtgg 10795478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 40272946 - 40272873
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  40272946 aaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaa 40272873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13628928 - 13628845
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| ||||||||   | | | ||||||||||||||||||||||||||| ||||||||    
T  13628928 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaagaaacagggtaaggctgcgtacaatacaccaataatggtgg 13628845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45139614 - 45139531
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| ||||||||||  || ||||| ||||||||   ||||| ||||||||||||| ||||||||||||||||||||||    
T  45139614 gaaaggtcacgggttcaagttttggaaacaacctcttgtgtaaaacacagggtaaggctgcatacaatacaccaaaaatggtgg 45139531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 13730738 - 13730657
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||||||||||||| ||||||||    
T  13730738 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgtgtacaatacaccaataatggtgg 13730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1217111 - 1217184
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  1217111 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 14986989 - 14987061
Alignment:
Q  12 ggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||| ||||||||    
T  14986989 ggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 14987061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34420780 - 34420704
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||| |||||||||||    
T  34420780 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtaccatacaccaaaa 34420704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26573148 - 26573222
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| |||||||||||||| ||||| |||| |||   ||| | |||||||||||||||||||||||||||    
T  26573148 gaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaaaacagggtaaggctgcgtacaatacaccaa 26573222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 516430 - 516507
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaa 78  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||||| |||||| ||||||||    
T  516430 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgcacaataaaccaaaaa 516507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 6411954 - 6411883
Alignment:
Q  4 aggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||| || ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  6411954 aggtcatgggttcaagtcttgtaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 6411883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 45948972 - 45948900
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||| |||||||| ||||| ||||| ||||||||   ||| ||||||||||||||| |||||||||||||    
T  45948972 aaggtcacgggttcaattcctggaaacaacctcttgtgtaaaaaatagggtaaggctgcatacaatacaccaa 45948900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 54374482 - 54374406
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||||||  |||||||||| || ||||| ||||||||   ||| |||||||||||||||||||||| ||||||||    
T  54374482 gaaaggtcacaggttcaagtcttggaaacaacctcttgtgtaaaaaatagggtaaggctgcgtacaatccaccaaaa 54374406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 7697020 - 7696948
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||| |||||||||||||| |||||  |||||||   |||||  |||||||||||||||||||||||||||    
T  7697020 aaaggtcacgggttcaagtcctggaaacagtctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 7696948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9607224 - 9607303
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatg 80  Q
    |||||||||| ||||||||||||| ||||| |||||||    ||| | |||||||||||||||| |||||||||| ||||    
T  9607224 gaaaggtcatcggttcaagtcctggaaacagcctcttgcgtaaaaaacagggtaaggctgcgtagaatacaccaataatg 9607303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 45786304 - 45786269
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  45786304 agggtaaggctgcgtacaatacaccaaaaatggtgg 45786269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 16735467 - 16735536
Alignment:
Q  6 gtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||| |||||||||||||  ||||| |||||||||  ||| | ||||||||||||||||||||||||||||    
T  16735467 gtcacgggttcaagtcctcgaaacagcctcttgtagaaaa-acagggtaaggctgcgtacaatacaccaaa 16735536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 31592880 - 31592943
Alignment:
Q  11 gggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  31592880 gggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 31592943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 54032693 - 54032623
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacc 73  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||| |||||||||||    
T  54032693 aaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaaaacagggtaaggctgcatacaatacacc 54032623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 4495798 - 4495725
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||| | ||| ||||   ||| | ||||||||||||||||||||||||||||    
T  4495798 aaggtcacgggttcaagtcctgaaaatagcctattgtgtaaaaaacagggtaaggctgcgtacaatacaccaaa 4495725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33926104 - 33926176
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacca 74  Q
    |||||||||||||||||||||||| ||| | ||||||||   ||| | |||||||||||| |||||||||||||    
T  33926104 gaaaggtcatgggttcaagtcctggaaatagcctcttgt-gtaaaaacagggtaaggctgtgtacaatacacca 33926176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22123051 - 22122978
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||  |||||||||||||| |||||  |||||||   |||||  |||||||||||||||||||||||||||    
T  22123051 gaaaggtcgcgggttcaagtcctggaaacagtctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 22122978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 53996702 - 53996626
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| | ||||||||| || ||||| ||||||||   ||| | ||||||||||||| |||||||||||||||    
T  53996702 gaaaggtcacgtgttcaagtcgtggaaacaacctcttgtgtaaaaaacagggtaaggctgcttacaatacaccaaaa 53996626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 353439 - 353404
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||| ||||||||    
T  353439 agggtaaggctgcgtacaatacaccaataatggtgg 353404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 12914159 - 12914096
Alignment:
Q  13 gttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||| ||||| ||||||||   ||| | |||||||||| |||||||||||||||||    
T  12914159 gttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggcggcgtacaatacaccaaa 12914096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 49013563 - 49013528
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||| ||||||||    
T  49013563 agggtaaggctgcgtacaatacaccaataatggtgg 49013528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22609797 - 22609861
Alignment:
Q  11 gggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||||| || ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  22609797 gggttcaagtcttggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 22609861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39203537 - 39203610
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||  ||||| ||||||||   |||||  |||||||| ||||||||||||||||||    
T  39203537 gaaaggtcacaggttcaagtccttgaaacagcctcttgtgtaaaaca--gggtaaggttgcgtacaatacaccaaa 39203610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 52428614 - 52428538
Alignment:
Q  1 gaaaggtcatgggttcaagtc-ctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| ||||| ||||| ||| || || ||||||||   ||| | ||||||||||||||||||||||||||||    
T  52428614 gaaaggtcacgggtttaagtctctggaagcagcctcttgtgtaaaatacagggtaaggctgcgtacaatacaccaaa 52428538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10543697 - 10543780
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||  ||||||||   ||| | ||||||||||||||||||||||||||||||||||||    
T  10543697 gaaaggtcacgggttcaagtcctggaaacggcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgg 10543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14530317 - 14530400
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| |||||||||  ||| | ||||||||||| ||||||||||||||| ||||||||    
T  14530317 gaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaacagggtaaggctacgtacaatacaccaataatggtgg 14530400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24200761 - 24200678
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||| |||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||||||||||    
T  24200761 gaaaagtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaaatggtgg 24200678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 8455450 - 8455377
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||||| ||||||||||||||||||||||||||||    
T  8455450 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaacacagggtaaggctgcgtacaatacaccaaa 8455377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10546161 - 10546237
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgta-ccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| |||||||||||||||   ||| | ||||||||||||||||||||||||||||    
T  10546161 gaaaggtcacgggttcaagtcctggaaacatcctcttgtataaaaaaacagggtaaggctgcgtacaatacaccaaa 10546237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7214533 - 7214615
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtg 83  Q
    ||||||||||||||||||||| || |||||  |||||||   ||| | |||||||||||||||||||||||| ||||||||||    
T  7214533 gaaaggtcatgggttcaagtcttggaaacagtctcttgtgtaaaatacagggtaaggctgcgtacaatacacaaaaaatggtg 7214615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19614991 - 19615075
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgga 85  Q
    ||||||||| |||||||||||||  |||||||||||||||  ||| | |||||||| |||||||||||| ||||| ||| |||||    
T  19614991 gaaaggtcacgggttcaagtccttgaaacatcctcttgtataaaaaacagggtaagactgcgtacaatataccaataatagtgga 19615075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23397765 - 23397838
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||||| ||||| ||||||||    || ||||||||||||| ||||||||||||||||    
T  23397765 gaaaggtcatgggttcaagtcctggaaacagcctcttgt--gtaaaatagggtaaggctacgtacaatacaccaaa 23397838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12024054 - 12023980
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  12024054 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 12023980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 17623565 - 17623685
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttcccaaatcgt 102  Q
    ||||||| |||||||||||||  ||||| ||||||||   |||   |||||||||||||||||||||||||  |||||||||||  ||||||| |||| |    
T  17623565 aaggtcacgggttcaagtcctcgaaacaacctcttgtgtaaaaatcagggtaaggctgcgtacaatacacc--aaatggtggaaccccttcccgaatcct 17623662  T
Q  103 gcatatgcacggaagctttagtgca 127  Q
    || ||||   |||||||||||||||    
T  17623663 gcgtatg--tggaagctttagtgca 17623685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 99399 - 99326
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||  ||||| |||||||||  ||||||  || |||||||||||||||||||||||    
T  99399 gaaaggtcacgggttcaagtcctagaaacagcctcttgtaaaaaacat--ggcaaggctgcgtacaatacaccaaa 99326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 22371059 - 22371128
Alignment:
Q  4 aggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||| |||||||||||||| ||||| |||| ||||   || | ||||||||||||||||||||||||||||    
T  22371059 aggtcacgggttcaagtcctggaaacagcctcgtgta---aaaacagggtaaggctgcgtacaatacaccaaa 22371128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 5841029 - 5841110
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||  ||||| ||| ||||   ||| ||||||||||| ||||||||||||| ||| ||||||||    
T  5841029 aaggtcacgggttcaagtcctagaaacagccttttgtgtaaaaaatagggtaaggatgcgtacaatacatcaataatggtgg 5841110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 17668003 - 17668076
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||| | ||||||||   |||   ||||||||||||||||||||||||||||    
T  17668003 aaggtcacgggttcaagtcctggaaagaacctcttgtgtaaaaatcagggtaaggctgcgtacaatacaccaaa 17668076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9671180 - 9671253
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||| |||| |||||||| ||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  9671180 gaaatgtcacgggttcaaatcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 9671253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21779395 - 21779322
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| | ||| ||||||||   |||||  |||||||| ||||||||||||||||||    
T  21779395 gaaaggtcacgggttcaagtcctggagacagcctcttgtgtaaaaca--gggtaaggttgcgtacaatacaccaaa 21779322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 40417005 - 40416933
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||| ||||||||||| || ||||| |||||||||  ||| | |||| ||||||| ||||||||||||||    
T  40417005 aaggtcacgggttcaagtcatggaaacaacctcttgtataaaaaacagggaaaggctgtgtacaatacaccaa 40416933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19977850 - 19977775
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||| ||| ||||| |||||| |   ||| ||||| ||||| ||||||||||||||||||    
T  19977850 gaaaggtcacgggttcaagttctggaaacagcctcttttgtaaaaaataggataaggttgcgtacaatacaccaaa 19977775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23145834 - 23145760
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| ||||||||||| || |||||  |||||||   ||| | || ||||||||||||||||||||||||    
T  23145834 gaaaggtcacgggttcaagtcttgaaaacagactcttgtgtaaaaaacagtgtaaggctgcgtacaatacaccaa 23145760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23557624 - 23557550
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| ||||||||||| || |||||  |||||||   ||| | || ||||||||||||||||||||||||    
T  23557624 gaaaggtcacgggttcaagtcttgaaaacagactcttgtgtaaaaaacagtgtaaggctgcgtacaatacaccaa 23557550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 14444730 - 14444802
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||| ||||||||||    
T  14444730 aaggtcacgggttcaagtcctggaaacagcctcttgt-gtaaaaacagggtaaggctgtgtacgatacaccaaa 14444802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 7136663 - 7136582
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||||||||||||||| ||||| ||||||||   |||   ||||||||||||||||||||||||||| ||||||||    
T  7136663 aaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaaaccagggtaaggctgcgtacaatacaccaataatggtgg 7136582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 20284209 - 20284124
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacata--gggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| |||||||||  ||| | |  |||||||||||||||||||||||||| ||||||||    
T  20284209 gaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaaaaaagggtaaggctgcgtacaatacaccaataatggtgg 20284124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39461132 - 39461050
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtg 83  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | || |||||||||||||||||||||||| |||||||    
T  39461132 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagagtaaggctgcgtacaatacaccaataatggtg 39461050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 6760823 - 6760904
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||| ||||||||||||||| ||||||||    
T  6760823 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggcttcgtacaatacaccaataatggtgg 6760904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 29521819 - 29521746
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  29521819 aaggtcacgggttcaagtcctggaaacagcctcttgtttaaaaaacagggtaaggctgcgtacaatacaccaaa 29521746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 36720797 - 36720870
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  36720797 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaa 36720870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12670384 - 12670311
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  12670384 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 12670311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21070838 - 21070752
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacata---gggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| |||||||||||||| ||||| |||||||||  ||| | |   |||||||||||||||||||||||||| ||||||||    
T  21070838 gaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaaaaaaaaagggtaaggctgcgtacaatacaccaataatggtgg 21070752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44781642 - 44781563
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatg 80  Q
    ||||| ||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||||||||||||||||||    
T  44781642 gaaagttcacgggttcaagtcctggaaacaacctcttgtgtaaaagacagggtaaggctgtgtacaatacaccaaaaatg 44781563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 26954133 - 26954215
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacat-agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| |  ||||||||||||||||||||||||||| ||||||||    
T  26954133 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaaacagggtaaggctgcgtacaatacaccaataatggtgg 26954215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 28817760 - 28817690
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacc 73  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||||||||||||||||||||    
T  28817760 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacacc 28817690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 8484069 - 8484000
Alignment:
Q  6 gtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||||||||||||| ||||| ||||||||   ||| | |||| ||||||||||||||||||||||    
T  8484069 gtcatgggttcaagtcctggaaacaacctcttgtgtaaaaaacagggcaaggctgcgtacaatacaccaa 8484000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35105922 - 35105995
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacacca 74  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | || |||||||||||||||||||||||    
T  35105922 gaaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaagagagtgtaaggctgcgtacaatacacca 35105995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 44530150 - 44530223
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| ||||||||||| || ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  44530150 aaggtcacgggttcaagtcttggaaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaa 44530223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 18164895 - 18164821
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||| ||||||||||||||||||    
T  18164895 gaaaggtcacgggttcaagtcctggaaacagcctcttgt-gtaaaaacagggtaaggttgcgtacaatacaccaaa 18164821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20869632 - 20869560
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  |||||||||||| ||||||||||||||    
T  20869632 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--agggtaaggctgtgtacaatacaccaa 20869560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 25250533 - 25250604
Alignment:
Q  13 gttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||||||| ||||| ||| ||||   ||| |||||||| |||||||||||||||||||| ||||||||    
T  25250533 gttcaagtcctggaaacagcctattgtgtaaaaaatagggtatggctgcgtacaatacaccaataatggtgg 25250604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 43942371 - 43942406
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  43942371 agggtaaggctgcgtacaatacaccaaaaatggtgg 43942406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 389642 - 389719
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtacc--aaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||  |  ||| | ||||||||| ||||||||||||||||||    
T  389642 gaaaggtcacgggttcaagtcctggaaacaccctcttgtgtcaaaaaaacagggtaaggttgcgtacaatacaccaaa 389719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 5135415 - 5135350
Alignment:
Q  11 gggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||| ||||| ||||||||   ||| | |||||||||||| |||||||||||||||    
T  5135415 gggttcaagtcctggaaacagcctcttgtgtaaaaaagagggtaaggctgtgtacaatacaccaaa 5135350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 8897898 - 8897825
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| ||||| |||||||| ||||| || |||||   ||| ||||||||||||| ||||||||||||||||    
T  8897898 aaggtcacgggttgaagtcctggaaacaaccgcttgtgtaaaaaatagggtaaggctacgtacaatacaccaaa 8897825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 13160703 - 13160775
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||  ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  13160703 aaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 13160775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 45071266 - 45071338
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||| ||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  45071266 aaggtcacgggttcaagttctggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 45071338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 17823575 - 17823697
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttcccaaatc 100  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||   ||| |||| ||||||| ||||||||  |||||||||||  ||||||| || |    
T  17823575 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaccaggataagactgcgtaaaatacacc--aaatggtggaaccccttcccgaacc 17823672  T
Q  101 gtgcatatgcacggaagctttagtgca 127  Q
     ||||||||||  | ||||||||||||    
T  17823673 ctgcatatgca--ggagctttagtgca 17823697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30454231 - 30454158
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  | ||||||||||||||| ||||||||||    
T  30454231 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--aaggtaaggctgcgtacgatacaccaaa 30454158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 20869970 - 20870005
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||| ||||||||    
T  20869970 agggtaaggctgcgtacaatacaccaataatggtgg 20870005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31457172 - 31457246
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| |||||  |||||||||||||||||| ||||    
T  31457172 gaaaggtcacgggttcaagtcctgtaaacaacctcttgt-gtaaaaataggaaaaggctgcgtacaatacatcaaa 31457246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22598156 - 22598230
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| |||||||| ||||| ||||| ||||||||   ||| | |||||||||||  ||||||||||||||    
T  22598156 gaaaggtcacgggttcaaatcctggaaacaacctcttgtgtaaaaaacagggtaaggctatgtacaatacaccaa 22598230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 44742653 - 44742579
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||| ||| |||||  ||| |||   ||| | |||||||||||||||||||||||||||||    
T  44742653 aaggtcatgagttcaagttctggaaacaatctcctgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaa 44742579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 5689636 - 5689705
Alignment:
Q  7 tcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||||||||| || ||| | ||||||||   |||   ||||||||||||||||||||||||||||    
T  5689636 tcatgggttcaagtcttgtaaatagcctcttgtgtaaaaagcagggtaaggctgcgtacaatacaccaaa 5689705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 35261680 - 35261753
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| ||||||||| |||| |||||  |||||||   ||| | ||||||||| ||||||||||||||||||    
T  35261680 aaggtcacgggttcaagccctggaaacagtctcttgtgtaaaaaacagggtaaggttgcgtacaatacaccaaa 35261753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 26457774 - 26457802
Alignment:
Q  47 atagggtaaggctgcgtacaatacaccaa 75  Q
    |||||||||||||||||||||||||||||    
T  26457774 atagggtaaggctgcgtacaatacaccaa 26457802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42083835 - 42083759
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    ||||||||| |||||||||||||| ||||| ||| ||||   ||| || ||| ||||||||||||| || |||||||    
T  42083835 gaaaggtcacgggttcaagtcctggaaacagccttttgtgtaaaaaatggggcaaggctgcgtacagtataccaaaa 42083759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 16408737 - 16408645
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttccc 95  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | |||||||| |||||||||||||||||| ||||||||||  |||||||    
T  16408737 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaataatggtggaaccccttccc 16408645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20224983 - 20225056
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||||| ||||| ||||||||   ||||  ||||||||||||||||||||||||||||    
T  20224983 gaaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaac--agggtaaggctgcgtacaatacaccaaa 20225056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 21646965 - 21647046
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||  ||||||||||||| ||||| ||||||||   ||| ||||||||||||||||||||||| ||||| ||||||||    
T  21646965 aaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaaaatagggtaaggctgcgtacaatataccaataatggtgg 21647046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9832447 - 9832374
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  9832447 gaaaggtcacgggttcaagtcctgaaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 9832374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48598959 - 48598886
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  48598959 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 48598886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17043530 - 17043455
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  17043530 gaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaatacagggtaaggctgcgtacaatacaccaaa 17043455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47443956 - 47444031
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| |||||||    ||| | ||||||||||||||||||||||||||||    
T  47443956 gaaaggtcacgggttcaagtcctggaaacagcctcttgcgtaaaaaacagggtaaggctgcgtacaatacaccaaa 47444031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19027847 - 19027921
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| |||||||||||||| ||||| | ||||||   ||| | |||||||||||||||||||||||||||    
T  19027847 gaaaggtcacgggttcaagtcctggaaacaacatcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaa 19027921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 5648260 - 5648332
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||||||| ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  5648260 aaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 5648332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47528664 - 47528591
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  47528664 gaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 47528591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6430761 - 6430687
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| ||||||||||| || ||||| ||||||||   ||| | ||||||||||||||||||||||||||||    
T  6430761 gaaaggtcacgggttcaagtcatggaaacagcctcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 6430687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 16911562 - 16911644
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||||||| |||||||||||||  ||||| ||||||||    ||   ||||||||||||||||||||||||||| ||||||||    
T  16911562 aaaggtcacgggttcaagtcctagaaacagcctcttgtgtacaaatcagggtaaggctgcgtacaatacaccaataatggtgg 16911644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11054282 - 11054209
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| |||||  |||||||   |||||  ||||||| |||||||||||||||||||    
T  11054282 gaaaggtcacgggttcaagtcctgaaaacagtctcttgtgtaaaaca--gggtaagactgcgtacaatacaccaaa 11054209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29208032 - 29207959
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| |||   ||||||||   |||||  |||||||||||||||||||||||||||    
T  29208032 gaaaggtcacgggttcaagtcctggaaattgcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 29207959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39077930 - 39077857
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  ||||||||| ||||||||||| ||||||    
T  39077930 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--agggtaaggttgcgtacaatataccaaa 39077857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 20225121 - 20225156
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||||||||||||||||||||| ||||||||    
T  20225121 agggtaaggctgcgtacaatacaccaataatggtgg 20225156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30639379 - 30639453
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| |||||  |||||||   ||| | ||||||||||||||||||||||||||||    
T  30639379 gaaaggtcactggttcaagtcctggaaacagactcttgtgtaaaa-acagggtaaggctgcgtacaatacaccaaa 30639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35567169 - 35567244
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||||||||||||||| || ||||| || |||||   ||| | |||||||||||| |||||| ||||||||    
T  35567169 gaaaggtcatgggttcaagtcttggaaacagccacttgtgtaaaaaacagggtaaggctgtgtacaacacaccaaa 35567244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44363268 - 44363185
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    ||||||||| | |||||||||||| ||||| |||| |||   ||| | |||||| ||||||||||||  |||||||||||||||    
T  44363268 gaaaggtcacgagttcaagtcctgaaaacagcctcgtgtgtaaaaaacagggtagggctgcgtacaacgcaccaaaaatggtgg 44363185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 9987957 - 9987895
Alignment:
Q  14 ttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||||| ||||| ||||||||   ||  ||||||||||||||| ||||||||||||||    
T  9987957 ttcaagtcctggaaacaacctcttgtgtaaacaatagggtaaggctgcatacaatacaccaaa 9987895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 10660415 - 10660485
Alignment:
Q  13 gttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtg 83  Q
    |||||||||||| ||||| |||||| |   ||| |||||||| |||||| ||||||||||||| |||||||    
T  10660415 gttcaagtcctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacaccaataatggtg 10660485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 10874560 - 10874630
Alignment:
Q  13 gttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaaatggtg 83  Q
    |||||||||||| ||||| |||||| |   ||| |||||||| |||||| ||||||||||||| |||||||    
T  10874560 gttcaagtcctggaaacaacctcttatgtaaaaaatagggtatggctgcatacaatacaccaataatggtg 10874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 20639777 - 20639719
Alignment:
Q  19 gtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||| ||||| ||||||||   ||| | |||||||||||||||||||||||||||||    
T  20639777 gtcctggaaacagcctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaaa 20639719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 54730249 - 54730343
Alignment:
Q  2 aaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaaca-tagggtaaggctgcgtacaatacaccaaaaatggtggaagtccttccc 95  Q
    |||||||| |||||||||||||  ||||| ||||||||   ||| | |||| |||||||||||| |||||||||| |||| |||||  |||||||    
T  54730249 aaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaaaaataggataaggctgcgtataatacaccaataatgatggaaccccttccc 54730343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 25343234 - 25343263
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaaa 78  Q
    ||||||||||||||||||||||||||||||    
T  25343234 agggtaaggctgcgtacaatacaccaaaaa 25343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7038052 - 7038127
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||||||  ||||||||||||| ||||| | ||||||   ||| |||||||||| || |||||||||||||||||    
T  7038052 gaaaggtcacaggttcaagtcctg-aaacagcttcttgtgtaaaaaatagggtaagacttcgtacaatacaccaaaa 7038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 30352667 - 30352635
Alignment:
Q  52 gtaaggctgcgtacaatacaccaaaaatggtgg 84  Q
    |||| ||||||||||||||||||||||||||||    
T  30352667 gtaaagctgcgtacaatacaccaaaaatggtgg 30352635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 54175110 - 54175138
Alignment:
Q  49 agggtaaggctgcgtacaatacaccaaaa 77  Q
    |||||||||||||||||||||||||||||    
T  54175110 agggtaaggctgcgtacaatacaccaaaa 54175138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 46832 - 46905
Alignment:
Q  3 aaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||| |||||||||| ||| ||||| ||||||||   ||| ||||||||||| ||||||||||||||||||    
T  46832 aaggtcacgggttcaagtgctggaaacaacctcttgtgtaaaaaatagggtaaggttgcgtacaatacaccaaa 46905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1721 - 1648
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||||||||||||||||| ||||| ||||||||   ||||  ||| ||||||||| ||||||||||||||    
T  1721 gaaaggtcatgggttcaagtcctgaaaacaacctcttgtgtaaaac--aggataaggctgcatacaatacaccaaa 1648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4156 - 4230
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaa 75  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||| | ||| ||||| |||||||||||||||||    
T  4156 gaaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaatacaggataaggttgcgtacaatacaccaa 4230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11130 - 11203
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||| |  |||||||||| ||||||||||||||    
T  11130 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaacaaa--gtaaggctgcttacaatacaccaaa 11203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10184 - 10111
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  || ||||| |||||||||||||||||||    
T  10184 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--agagtaagactgcgtacaatacaccaaa 10111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20512 - 20439
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||| |||||||||||||| ||||| ||||||||   ||||  || ||||| |||||||||||||||||||    
T  20512 gaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaac--agagtaagactgcgtacaatacaccaaa 20439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30578 - 30651
Alignment:
Q  1 gaaaggtcatgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    |||||||||  ||||||||||||| ||||| ||||||||   |||||  ||||| |||||||||||||||||||||    
T  30578 gaaaggtcaccggttcaagtcctggaaacagcctcttgtgtaaaaca--gggtagggctgcgtacaatacaccaaa 30651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 48760 - 48695
Alignment:
Q  9 atgggttcaagtcctgcaaacatcctcttgtaccaaacatagggtaaggctgcgtacaatacaccaaa 76  Q
    ||||||||||||  || ||||| ||||||||   |||||  |||||||||||||||||||||||||||    
T  48760 atgggttcaagtggtggaaacagcctcttgtgtaaaaca--gggtaaggctgcgtacaatacaccaaa 48695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University