View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_24 (Length: 248)
Name: NF4226_low_24
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_24 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0991 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 4822820 - 4822581
Alignment:
| Q |
9 |
cacagaaaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcaca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822820 |
cacagaaaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcaca |
4822721 |
T |
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| Q |
109 |
gggtttgcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822720 |
gggtttgcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgag |
4822621 |
T |
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| Q |
209 |
ttacttattccgcaactcataacaagtgtaccttaacacc |
248 |
Q |
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| T |
4822620 |
ttacttattccacaactcataacaagtgtaccttaacacc |
4822581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 4834668 - 4834470
Alignment:
| Q |
15 |
aaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcacagggttt |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4834668 |
aaaacaagaaaacggcttcacctcttttgacattagtttaagttcagcgacaagagctttcgctgtcttctcaatgccacgtgtgataagcacagggttt |
4834569 |
T |
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| Q |
115 |
gcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgagttactt |
214 |
Q |
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| T |
4834568 |
gcaccagctgcaacaacctataaaataaaatttcactct-aaatgagaccccaattatgtaac---aagcaaaaccaaatcaagcatttattagttactt |
4834473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0991
Description:
Target: scaffold0991; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 1425 - 1623
Alignment:
| Q |
15 |
aaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcacagggttt |
114 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1425 |
aaaacaagaaaacggcttcacctcttttgacattagtttaagttcagcgacaagagctttcgctgtcttctcaatgccacgtgtgataagcacagggttt |
1524 |
T |
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| Q |
115 |
gcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgagttactt |
214 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||| ||||||||||||| |||||| |||| |||||||| |
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| T |
1525 |
gcaccagctgcaacaacctataaaataaaatttcactct-aaatgagaccccaattatgtaac---aagcaaaaccaaatcaagcatttattagttactt |
1620 |
T |
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