View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_25 (Length: 245)
Name: NF4226_low_25
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26836146 - 26835904
Alignment:
| Q |
1 |
gttccaccggatatggagtacaatattgagggcctattatggtggtggggagtggtggcatcggtgcagatgcagaaggttgtggttgataaggataagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
26836146 |
gttccaccggatatggagtacaatattgagggcctattatggtggtggggagtggtggcatcggtgcagaggaagaaggttgtggttgataaggataagc |
26836047 |
T |
|
| Q |
101 |
catgatgatagtaacgatgatggtgttggtgatatatatg------tatacgtatatattttatgttatgctagcttttagtttttgtttgtgatgagat |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26836046 |
catgatgatagtaacgatgatggtgttggtgatatatatgtatatgtatacgtatatattttatgttatgctagcttttagtttttgtttgtgatgagat |
26835947 |
T |
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| Q |
195 |
cagaatcttgtttgttctgttaggcaaatatatgtgtgagaat |
237 |
Q |
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| T |
26835946 |
cagaatcttgtttgttctgttaggcaaatatatgtgtgagaat |
26835904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 26823999 - 26823891
Alignment:
| Q |
132 |
atatatatgtatacgtatatattttatgttatgctagcttttagtttttgtttgtgatgagatcagaatcttgtttgttctgttagg---caaatatatg |
228 |
Q |
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|||||||||||| ||| ||| |||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
26823999 |
atatatatgtatgtatatgtatgttatgttatgctggctcttagtttttgtttgtgttgagatcagagtcttgtttgttctgttaggtaataaatatatg |
26823900 |
T |
|
| Q |
229 |
tgtgagaat |
237 |
Q |
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||||||||| |
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| T |
26823899 |
tgtgagaat |
26823891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 26824134 - 26824044
Alignment:
| Q |
63 |
ggtgcagatgcagaaggttgtggttgataaggataagccatgatgatagtaacgatgatggtgttggtgatatatatgtatacgtatatat |
153 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||||||||| ||| |||| ||||||| |
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| T |
26824134 |
ggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatgacgaggttggtgatatgtatatatatatatatat |
26824044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 26805438 - 26805332
Alignment:
| Q |
9 |
ggatatggagtacaatattgagggcctattatggtggtggggagtggtggcatcgg---tgcagatgcagaaggttgtggttgataaggataagccatga |
105 |
Q |
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||||| |||| ||||||||||||||| | ||||||||| || || |||||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
26805438 |
ggatacggagcacaatattgagggccaaatatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatga |
26805339 |
T |
|
| Q |
106 |
tgatagt |
112 |
Q |
| |
|
||||||| |
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| T |
26805338 |
tgatagt |
26805332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 26795551 - 26795447
Alignment:
| Q |
3 |
tccaccggatatggagtacaatattgagggcctattatggtgg---tggggagtggtggcatcggtgcagatgcagaaggttgtggttgataaggataag |
99 |
Q |
| |
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||||||||||| |||| |||||||||||| || | ||||| || |||||||||| ||||| |||||||| ||||| || |||| | |||||||||||| |
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| T |
26795551 |
tccaccggatacggagcacaatattgaggaccgaatatggcggcggtggggagtggcggcattggtgcagaggcagatggctgtgctggataaggataag |
26795452 |
T |
|
| Q |
100 |
ccatg |
104 |
Q |
| |
|
||||| |
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|
| T |
26795451 |
ccatg |
26795447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 26824267 - 26824166
Alignment:
| Q |
5 |
caccggatatggagtacaatattgagggcctattatggtggtggggagtggtggcatcgg---tgcagatgcagaaggttgtggttgataaggataagcc |
101 |
Q |
| |
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||||||||| ||| |||||||||||||| |||||||||||| || || |||||||| |||||| ||||| |||||||||||| ||||||||||| |
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| T |
26824267 |
caccggatacggatcacaatattgagggcatattatggtggttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgacaaggataagcc |
26824168 |
T |
|
| Q |
102 |
at |
103 |
Q |
| |
|
|| |
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|
| T |
26824167 |
at |
26824166 |
T |
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