View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4226_low_26 (Length: 239)
Name: NF4226_low_26
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 44559434 - 44559494
Alignment:
| Q |
95 |
aaaacttatttcgtgtgtgggtctagtccaatccaataagcactattgggccttggcacaa |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44559434 |
aaaacttatttcgtgtgtgggtctagtccaatccaataagcactattgggcctcggcacaa |
44559494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 44558972 - 44559039
Alignment:
| Q |
30 |
acgatatggtctattcatttataatgaaacaatacatatagacgaaaatacacatttttctttataaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
44558972 |
acgatatggtctattcatttataatgaaataatacatatagactaaaccacacatttttctttataaa |
44559039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University