View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4226_low_27 (Length: 237)

Name: NF4226_low_27
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4226_low_27
NF4226_low_27
[»] chr7 (6 HSPs)
chr7 (1-86)||(26836233-26836318)
chr7 (142-222)||(26836374-26836454)
chr7 (16-81)||(26789748-26789813)
chr7 (2-86)||(26824683-26824767)
chr7 (16-78)||(26805551-26805613)
chr7 (179-222)||(26824854-26824897)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26836233 - 26836318
Alignment:
Q  1 tctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccctacgtcgcaaggtatgttcaac 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26836233 tctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccccatcatcaccctacgtcgcaaggtatgttcaac 26836318  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 26836374 - 26836454
Alignment:
Q  142 taatccaagtaaacaagcttttgctcggatcatacatacactcatcattgtcttaagatataagattcactggtgattact 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26836374 taatacaagtaaacaagcttttgctcggatcatacatacactcatcattgtcttaagatataagattcaatggtgattact 26836454  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 26789748 - 26789813
Alignment:
Q  16 cgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccctacgtcgcaaggtatgt 81  Q
    ||||||| ||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||    
T  26789748 cgtgaccgccgtgtcttggttgatgcctccggtaaccccatcaccaccctacgtcgcaaggtatgt 26789813  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 26824683 - 26824767
Alignment:
Q  2 ctgtgtttaccatacgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccctacgtcgcaaggtatgttcaac 86  Q
    |||| |||||| || |||| |||||| ||||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||||||    
T  26824683 ctgtatttaccctaggtgatcaccgtctcttggttgatgccgcccggaaccccatcatcaccctacgtcgtaaggtatgttcaac 26824767  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 26805551 - 26805613
Alignment:
Q  16 cgtgaccaccgtgtcttggttgatgcggccggtaaccctatcatcaccctacgtcgcaaggta 78  Q
    ||||||| |||||||||||||||||| || | ||||||||||| |||||||||||||||||||    
T  26805551 cgtgaccgccgtgtcttggttgatgccgcagataaccctatcaccaccctacgtcgcaaggta 26805613  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 26824854 - 26824897
Alignment:
Q  179 acactcatcattgtcttaagatataagattcactggtgattact 222  Q
    |||| |||| |||||||||||||||||||||| |||||||||||    
T  26824854 acacacatcgttgtcttaagatataagattcaatggtgattact 26824897  T

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