View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_28 (Length: 236)
Name: NF4226_low_28
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37399095 - 37398876
Alignment:
| Q |
1 |
actccgataaaaagaatttttgtggttgcaattttcnnnnnnnnataagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaattttatt |
100 |
Q |
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| T |
37399095 |
actccgataagaagattttttgtggttgcaattttctttattttataagggaagaccaaaacttttgaaccgtatgtaatacttaagctgcaattttatt |
37398996 |
T |
|
| Q |
101 |
tattctatcaatttttgtccaaattaattactatttgataagctcacttacttcactttttacaaacatcaattcttttaatgataccaatgttaatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37398995 |
tattctatcaatttttgtccaaattaattactatttgataagcttacttacttcaccttttacaaacatcaattcttttaaggataccaatgttaatgta |
37398896 |
T |
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| Q |
201 |
tcagtaaagagggatatttt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
37398895 |
tcagtaaagagggatatttt |
37398876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 37380618 - 37380526
Alignment:
| Q |
1 |
actccgataaaaagaatttttgtggttgcaattttcnnnnnnnnataagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaat |
94 |
Q |
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| T |
37380618 |
actccgctaagaagaatttttgtggttgcaatttt-atttttttataagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaat |
37380526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 37370986 - 37370930
Alignment:
| Q |
146 |
acttacttcact-ttttacaaacatcaattcttttaatgataccaatgttaatgtat |
201 |
Q |
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| T |
37370986 |
acttacttcactgttttacaaacatcaattcttttaaggataccaatgttaatgtat |
37370930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 37441986 - 37442033
Alignment:
| Q |
47 |
aagggaagaccaagacttttgaaccgtatgtaatacttaagctgcaat |
94 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
37441986 |
aagggaagaccaagacttttgaaccatatgtaatacttaagttgcaat |
37442033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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