View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_4 (Length: 530)
Name: NF4226_low_4
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 427796 - 427506
Alignment:
| Q |
19 |
aaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaattgaaagttgaaatactgattttttatga |
118 |
Q |
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| T |
427796 |
aaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaatcgaaagttgaaatactgattttttatga |
427697 |
T |
|
| Q |
119 |
tcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattaccatattctcttgttttgggactttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427696 |
tcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattaccatattctcttgttttgggactttg |
427597 |
T |
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| Q |
219 |
aagtaggtctccaagagaaagagagagagctaatgtacaatcttaaaaagtcccatgtagatttggcaaagaataatgatattccacataa |
309 |
Q |
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| T |
427596 |
aagtaggtctccaagagaaagagagagagctaatgtacaatcttaaaaagtcccatgtagatttggcaaagaataatgatattccacataa |
427506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 310 - 504
Target Start/End: Complemental strand, 426423 - 426229
Alignment:
| Q |
310 |
tgacgttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgca |
409 |
Q |
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| T |
426423 |
tgacgttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgca |
426324 |
T |
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| Q |
410 |
aggaaacccactattaaatcaaagtggcatactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
504 |
Q |
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| T |
426323 |
aggaaacccactattaaatcaaagtggcatactttttgaaggtcatgcatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
426229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 337 - 504
Target Start/End: Complemental strand, 436922 - 436759
Alignment:
| Q |
337 |
tgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgcaaggaaacccactattaaatcaaagtgg |
436 |
Q |
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||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | |
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| T |
436922 |
tgggggaagagattagcgagatcttcaggtggatttcaggggttccataaattgtgcatttgcgtaaaatgcaaggaaatgcactattaaatcaaagcga |
436823 |
T |
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| Q |
437 |
catactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
504 |
Q |
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| T |
436822 |
catactttttgaaggtc----ataaagctttaatagagcaactactaggccatcacaaaataagtaat |
436759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 15564366 - 15564089
Alignment:
| Q |
19 |
aaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaattgaaagttgaaatactgattttttatga |
118 |
Q |
| |
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||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||| ||||||| | |||||| |||||||||||||||||||| |||||| |
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| T |
15564366 |
aaatccaaccttataaagaacccaaaatctcatcaggttggtttttcaattttacttttgaaacagaaaaatcgaaagttgaaatactgatttcttatga |
15564267 |
T |
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| Q |
119 |
tcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattaccatattctcttgttttgggactttg |
218 |
Q |
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| ||||| |||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||| |||||||||| |||||| |
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| T |
15564266 |
tagaatttttgc-ttattaaatcttgaaatcaatgctattgtagtttagcac-ctttcaatttgagtatcattaccttattatcttgttttgtcactttg |
15564169 |
T |
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| Q |
219 |
aagtaggtctccaagagaaagagagagagctaatgtacaatcttaaaaagtcccatgtagatttggcaaagaataatgatattccac |
305 |
Q |
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| T |
15564168 |
aagtaggtcgcc-------agagagagaagtaatgtacattcttaaaaagtcccatatacatttggcaaagaataacgatgttccac |
15564089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 18393065 - 18393248
Alignment:
| Q |
19 |
aaatccaacctcataaagaacccaaaagctcaacaggttggtttttcaaatttacctttgaaaaacaaaaattgaaagttgaaatactgattttttatga |
118 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
18393065 |
aaatccaacctcataaa-aacccaaaatctcatcaggttggtttttcaatattacctttgaaagacaaaaattgaaagtttaaatattgattttttatga |
18393163 |
T |
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| Q |
119 |
tcgaattcttgctttattaaatcttgaattcaatgctattgtagtttagaactctttcaatttgagtatcattaccatattctctt |
204 |
Q |
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| T |
18393164 |
tagaatttttgctt-attaaatctagaattcaatgctattgtagtttagcactctttcaatttgagtatcattaccatattatctt |
18393248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 310 - 504
Target Start/End: Complemental strand, 15563081 - 15562891
Alignment:
| Q |
310 |
tgacgttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgca |
409 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||| |||||| |||| ||||| | ||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
15563081 |
tgacgttgaagctaatactaatggatttggaggaaaggattagtgagatgtttagatggatttcacgggttccagaaattaggcatttgcgtaaaatgca |
15562982 |
T |
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| Q |
410 |
aggaaacccactattaaatcaaagtggcatactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
504 |
Q |
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|||||| ||||| |||||||||| |||||||||| |||||||| |||||||||| | |||||||||||| |||||| ||||| || ||||| |
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| T |
15562981 |
aggaaatgcactactaaatcaaagcggcatactttctgaaggtc----atgcagctttcaaagagcaaccactgggccattacaaattaggtaat |
15562891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 332 - 504
Target Start/End: Original strand, 18394299 - 18394467
Alignment:
| Q |
332 |
ggatttgggggaagagattagcaagatctttaggtagatttcaggggttccataaattgcgcatttgcgtaaaatgcaaggaaacccactattaaatcaa |
431 |
Q |
| |
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|||||||||||||||||||| | |||| ||||||| |||||||||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||| || |
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| T |
18394299 |
ggatttgggggaagagattaacgagatgtttaggtggatttcagggcttccagaaattggccattttcgtaaaatgcaaggaaattcactattaaatgaa |
18394398 |
T |
|
| Q |
432 |
agtggcatactttttgaaggtcatgtatgcagctttaatagagcaaccactaggccatcacaaaataagtaat |
504 |
Q |
| |
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||||||||| ||| |||||||| |||||||||||| || ||||||||||||| || |||||||||||| |
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| T |
18394399 |
agtggcatattttctgaaggtc----atgcagctttaaaagtgcaaccactaggctgtcgtaaaataagtaat |
18394467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 15564035 - 15564078
Alignment:
| Q |
310 |
tgacgttgaaactaatactaatggatttgggggaagagattagc |
353 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
15564035 |
tgacgttacaactaatactactggatttgggggaagagattagc |
15564078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 18393274 - 18393327
Alignment:
| Q |
249 |
taatgtacaatcttaaaaagtcccatgtagatttggcaaagaataatgatattc |
302 |
Q |
| |
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|||||||| ||| |||||||||||| ||||||||| ||||||||||| ||||| |
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| T |
18393274 |
taatgtacggtctcaaaaagtcccatatagatttggtaaagaataatggtattc |
18393327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 19350948 - 19350883
Alignment:
| Q |
314 |
gttgaaactaatactaatggatttgggggaagagattagcaagatctttaggtagatttcaggggtt |
380 |
Q |
| |
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|||||| ||||| |||||||||||||| |||||||||| |||| ||||||| ||||||||||||| |
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| T |
19350948 |
gttgaagctaatggtaatggatttgggg-aagagattagtgagatgtttaggtggatttcaggggtt |
19350883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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