View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4226_low_6 (Length: 455)
Name: NF4226_low_6
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 52584047 - 52583650
Alignment:
| Q |
1 |
gaatgaaaaatatgctgagaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584047 |
gaatgaaaaatatgctgagaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaagcagagttgaggattcatggacattta |
52583948 |
T |
|
| Q |
101 |
ttggctgacaaacatgaacatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttct-----cttcctgattttatgttcac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52583947 |
ttggctgacaaacatgaacatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcac |
52583848 |
T |
|
| Q |
196 |
tagtactaataaagaaaattgcatcatacttgagtagtattcg------------aattaagtgctagagtttatcaaataagtgtttatgtataaatta |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583847 |
tagtactaataaagaaaattgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaatta |
52583748 |
T |
|
| Q |
284 |
tttttaaaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583747 |
tttttaaaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
52583650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 52583443 - 52583376
Alignment:
| Q |
388 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatc |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatc |
52583376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
290 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
354 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
255 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
255 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
297 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
262 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University