View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4226_low_8 (Length: 434)
Name: NF4226_low_8
Description: NF4226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4226_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 26687264 - 26687669
Alignment:
| Q |
11 |
cagagaccaagcaggaaaccactagtttgaatcaagcatctgacaactcaacaagacaattctatcatcaaaccaaaaagtatgagatcatataatatca |
110 |
Q |
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| T |
26687264 |
cagagaccaagcaggaaactactagtttgaatcaagcatctgaaaactcaacaagacaattctatcatcaaaccaaaaagtatgagatcatataatatca |
26687363 |
T |
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| Q |
111 |
tacattcttttgaacaattgtttatgtaaatttttgtaatatatttttattaccttgaaagtaactttgatatggatattattttgaattaggatctttt |
210 |
Q |
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| T |
26687364 |
tacattcttttgaacaattgtttatgtaactttttgtaatatatttttattaccttgaaagtaactttgatatggatattattttgaattaggatctttg |
26687463 |
T |
|
| Q |
211 |
ttggttcctggaatattggaggcattgcaccacctcagaatttggtcattgaagattggcttgacacacaaaatgattctgcagatatttatgttttggg |
310 |
Q |
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| T |
26687464 |
ttggttcctggaatattggaggcattgcaccacctcataatttggacattgaagattggcttgacacacaaaatgattctgcagatatttatgttttggg |
26687563 |
T |
|
| Q |
311 |
gtaaaattttctcttattactttacattatttgtaagaatcaacttcatagacactaaattgttgcaagattgattcctttggcgattagatcctataca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26687564 |
gtaaaattttctcttattactttacattatttgtaagaatcaacttcatagacactaaattgttgtaagattgattcctttggcgattagatcctataca |
26687663 |
T |
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| Q |
411 |
agtgct |
416 |
Q |
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|||||| |
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| T |
26687664 |
agtgct |
26687669 |
T |
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