View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_high_10 (Length: 394)

Name: NF4227_high_10
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_high_10
NF4227_high_10
[»] chr5 (13 HSPs)
chr5 (226-376)||(1052199-1052350)
chr5 (21-124)||(1052870-1052973)
chr5 (28-124)||(1046210-1046306)
chr5 (326-376)||(1032876-1032926)
chr5 (210-367)||(1045975-1046130)
chr5 (339-385)||(1043275-1043321)
chr5 (62-124)||(1071009-1071071)
chr5 (339-385)||(1049579-1049625)
chr5 (339-373)||(1065046-1065080)
chr5 (331-376)||(1058007-1058052)
chr5 (47-124)||(1065270-1065347)
chr5 (331-376)||(1070347-1070392)
chr5 (29-113)||(1050993-1051077)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 1052350 - 1052199
Alignment:
Q  226 tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgt-tattaattgctcatttgataaaa 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  1052350 tataaaataagtatcatctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtcaattaattgctcattagataaaa 1052251  T
Q  325 ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1052250 ttaaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 1052199  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 1052973 - 1052870
Alignment:
Q  21 ctcggttgtgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1052973 ctcggttgtgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgac 1052874  T
Q  121 aaac 124  Q
    ||||    
T  1052873 aaac 1052870  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 1046306 - 1046210
Alignment:
Q  28 gtgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 124  Q
    ||||||||||||  |||| || |||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  1046306 gtgtgaattgtgatatttcaataccattgcctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaac 1046210  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 1032926 - 1032876
Alignment:
Q  326 taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1032926 taaatacatactagaattagaaactcttccaacatgccaaatctgacagaa 1032876  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 367
Target Start/End: Complemental strand, 1046130 - 1045975
Alignment:
Q  210 taattaaactagtgaatataaaataagtatcat-ctctaacaaaaatttcattcccacctaaaagtaatacttgaaaaattagaaaaatatgtta-ttaa 307  Q
    |||||||||||||||| |||||  || |||||| || |||||||||||  ||||| ||||||||  |||||| ||||||| | |||||| ||||| ||||    
T  1046130 taattaaactagtgaacataaatcaa-tatcattctgtaacaaaaattcaattcctacctaaaaa-aatact-gaaaaatca-aaaaatttgttagttaa 1046035  T
Q  308 ttgctcatttgataaaattaaatacatactagaattagaaactcttccaacatgccaaat 367  Q
    ||||| ||||||| ||| ||||| ||||| |||||||||||| || |||||| |||||||    
T  1046034 ttgctaatttgattaaactaaatgcataccagaattagaaaccctaccaacaagccaaat 1045975  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 1043321 - 1043275
Alignment:
Q  339 gaattagaaactcttccaacatgccaaatctgacagaataatctacc 385  Q
    ||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  1043321 gaatttgaaactcttccaacatgccaaatctgacagaaaaatatacc 1043275  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 1071071 - 1071009
Alignment:
Q  62 aatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 124  Q
    |||||||||| | ||| | |||||||| |||||||||||||||||||||||||| ||| ||||    
T  1071071 aatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgataaac 1071009  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 1049625 - 1049579
Alignment:
Q  339 gaattagaaactcttccaacatgccaaatctgacagaataatctacc 385  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| ||||    
T  1049625 gaatttgaaactcttccaacatgccaaatttgacagaaaaatatacc 1049579  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 1065080 - 1065046
Alignment:
Q  339 gaattagaaactcttccaacatgccaaatctgaca 373  Q
    |||| ||||||||||||||||||||||||||||||    
T  1065080 gaatcagaaactcttccaacatgccaaatctgaca 1065046  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 1058052 - 1058007
Alignment:
Q  331 acatactagaattagaaactcttccaacatgccaaatctgacagaa 376  Q
    |||||| || || ||||||||||||||| |||||||||||||||||    
T  1058052 acataccagtatcagaaactcttccaacgtgccaaatctgacagaa 1058007  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 1065347 - 1065270
Alignment:
Q  47 aaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccatttggttgacaaac 124  Q
    |||||||| || || ||||||||||||||||   |||||||| || ||||||||||| || |||||||| ||| ||||    
T  1065347 aaaaccattacttcgaatttgtggtgtgagtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaac 1065270  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 1070392 - 1070347
Alignment:
Q  331 acatactagaattagaaactcttccaacatgccaaatctgacagaa 376  Q
    |||||| || || |||||||||||||||||||||||| ||||||||    
T  1070392 acataccagtatcagaaactcttccaacatgccaaatttgacagaa 1070347  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 1051077 - 1050993
Alignment:
Q  29 tgtgaattgtggcatttgaaaaccatcacctccaatttgtggtgtgagtagtttgtctgttgaagatattggtgcttgcccattt 113  Q
    |||||||||||  |||| || | |||||||||||||||||||||| ||||| |||  ||  |||||| ||||| |||| ||||||    
T  1051077 tgtgaattgtgatatttcaacagcatcacctccaatttgtggtgtaagtagcttgcttgcagaagatgttggttcttgtccattt 1050993  T

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