View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_high_11 (Length: 388)
Name: NF4227_high_11
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 195 - 374
Target Start/End: Original strand, 10399389 - 10399570
Alignment:
| Q |
195 |
caataccaatgatataagtagc----tagccttgctagagggtaattaccaatgatatatccctctcgcttcacccaatataattatgatgcaataaacg |
290 |
Q |
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| T |
10399389 |
caataccaattatataagtagctagctagccttgccacagggtaattaccaatgatatatccctctcgcttcacccaatatagttatgatgcaataaacg |
10399488 |
T |
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| Q |
291 |
tctaaaccaaaacattgccataaatggatcaaagcaagtnnnnnnnntgaatttaatttaagaaggaaaaatcaatgaagaatg |
374 |
Q |
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| T |
10399489 |
tctaaaccaaaacattgccataaatggatcaaagcaagt--ggggggtgaattcaatttaagaaggaaaaatcaatgaagaatg |
10399570 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 6831185 - 6831146
Alignment:
| Q |
14 |
aggggcttatttcgtatttataataattttcttagccttt |
53 |
Q |
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| T |
6831185 |
aggggcttattttgtgtttataataattttcttagccttt |
6831146 |
T |
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