View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_high_12 (Length: 350)
Name: NF4227_high_12
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 164 - 334
Target Start/End: Complemental strand, 15156938 - 15156767
Alignment:
| Q |
164 |
aattatattgtgtgcagttattttcta-gaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggtt |
262 |
Q |
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| T |
15156938 |
aattatattgtgtgctgttattttctaagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggtt |
15156839 |
T |
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| Q |
263 |
cattagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttc |
334 |
Q |
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|||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
15156838 |
cattaggaaaggagagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttc |
15156767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 169 - 334
Target Start/End: Original strand, 19808513 - 19808676
Alignment:
| Q |
169 |
tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttcattag |
268 |
Q |
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| T |
19808513 |
tattgtgtgcagttattttctagaatgtg--tattctgttatataaataaagaatagtcagacttaatagttatcttagaattattgtgtggttcattgg |
19808610 |
T |
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| Q |
269 |
aaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttc |
334 |
Q |
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| T |
19808611 |
aaaaggagagacacaaggctctcggaaccttgtgagtgtgtactgtgaatatttctgtgtaatttc |
19808676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 19808795 - 19808684
Alignment:
| Q |
28 |
tgatagaaactgataccaataggataaatgactgaatattattgtttattattgaatattctctggggaaaggttccctaatcagagataaatatacaat |
127 |
Q |
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| T |
19808795 |
tgatagaaactggtaccaataggataaacaactgaatattattgtttattattgaatattctctggggaaaggtttcctaatcagagataaatatacaat |
19808696 |
T |
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| Q |
128 |
cacagacttgta |
139 |
Q |
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|||| ||||||| |
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| T |
19808695 |
cacacacttgta |
19808684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 164 - 334
Target Start/End: Original strand, 25555600 - 25555762
Alignment:
| Q |
164 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc |
263 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| || |
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| T |
25555600 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc |
25555691 |
T |
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| Q |
264 |
attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttc |
334 |
Q |
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||||| ||||||||||||||||| | |||||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
25555692 |
attaggaaaggagagacacaaggatcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttc |
25555762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 25549303 - 25549376
Alignment:
| Q |
164 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaata |
237 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
25549303 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata |
25549376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 164 - 334
Target Start/End: Complemental strand, 20011229 - 20011067
Alignment:
| Q |
164 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc |
263 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| || |
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| T |
20011229 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc |
20011138 |
T |
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| Q |
264 |
attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttc |
334 |
Q |
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||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
20011137 |
attaggaaaggaaagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttc |
20011067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 334
Target Start/End: Complemental strand, 22621342 - 22621180
Alignment:
| Q |
164 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc |
263 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| || |
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| T |
22621342 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc |
22621251 |
T |
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| Q |
264 |
attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttc |
334 |
Q |
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||||| ||||||||||||||||| | |||||||||||| ||| |||||||| ||||||| ||||||||||| |
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| T |
22621250 |
attaggaaaggagagacacaaggttcttgaaaccttgtgagtatgtactgtgaatatttctgtgtgatttc |
22621180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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