View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_high_14 (Length: 327)
Name: NF4227_high_14
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 39838804 - 39838517
Alignment:
| Q |
23 |
tttttgtgattgagagagaatttgatgaagtttggtttatggaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaa |
122 |
Q |
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| T |
39838804 |
tttttgtgattgagagagaatttgatgaagtttggtttatagaattgataatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaa |
39838705 |
T |
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| Q |
123 |
tagaggagaattgcatgtgatagggtgcgggagttattgctctttcaataattatttaattgttaaattggttctgttattaaagtgtatagtttaataa |
222 |
Q |
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| T |
39838704 |
tagaggagaattgcatgtgatagggtgcgggagttattgctctttcaataattatttaattgttaaattggttctgttattaaagtgtatagtttaataa |
39838605 |
T |
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| Q |
223 |
acttcttatcatctttga-nnnnnnngtttggatcaaatgagttaagtgtcaattgacattgaagtttgatgtctacactgtcaaatc |
309 |
Q |
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| T |
39838604 |
acttcttatcatctttgattttttttgtttggatcaaatgagttaagtgtcaattgacattgaagtttgatgtgtacactgtcaaatc |
39838517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 31289764 - 31289626
Alignment:
| Q |
43 |
tttgatgaagtttggtttatggaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtga |
142 |
Q |
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| T |
31289764 |
tttgatgaactttgatttatgtaattgagaatgtgagtgttggattcaatgaataagaagaaggagttgaagggtttaaataaaggagaattgcaagtga |
31289665 |
T |
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| Q |
143 |
tagggtgcgggagttattgctctttcaataattatttaa |
181 |
Q |
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| T |
31289664 |
tggggtgggggagttattgctttttcattaattatttaa |
31289626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 31291016 - 31291112
Alignment:
| Q |
43 |
tttgatgaagtttggtttatggaattgagaatgtgagtaatggattgaatgaataaagaggaggagttgaagggcttaaatagaggagaattgcatgtga |
142 |
Q |
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| T |
31291016 |
tttgatgaactttggtttatgaaattgagaatatgagtgttggattgaatgaata---aggaggagtcgataggcttaaatagaggagaattgcatgtga |
31291112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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