View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_high_2 (Length: 634)
Name: NF4227_high_2
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 46023811 - 46024416
Alignment:
| Q |
19 |
tacataagcatttaatttcttattgatcaattagtccacaacttcttttcataaacaaactctttttctcagactctcatggaaaacacagacaccttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46023811 |
tacataagcatttaatttcttattgatcaattagtccacaacttcttttcataaacaaactctttttctcagactctcatggaaaacaaagacaccttaa |
46023910 |
T |
|
| Q |
119 |
aatttccacaccaaactcacaaaaacaacaatatttcattgatccct--------agacaaaccctatgagaacaaagaaaggaacactattaagaagat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46023911 |
aatttccacaccaaactcacaaaaacaacaatatttctttgatccctcatgaaatagacaaaccctatgagaacaaagaaagaaacactattaagaagat |
46024010 |
T |
|
| Q |
211 |
tccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgagacaaaggccatcaggaagatggatagctgagatcaaagactcatcacagaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024011 |
tccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatcacagaaa |
46024110 |
T |
|
| Q |
311 |
ctaagactatggttaggtacttttgatagagcagaagatgctgctttgtcatatgattctgctgcaaggcttcttagaggaagaaatgccaaaactaact |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46024111 |
ctaagactatggttaggtacttttgatagagcagaagatgctgctctgtcatatgattctgctgcaaggcttcttagaggaagaaatgccaaaactaact |
46024210 |
T |
|
| Q |
411 |
ttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccatgcagtttctgc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
46024211 |
ttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccatgcagtttcttc |
46024310 |
T |
|
| Q |
511 |
atcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaggaaactatagtctgttctattcctgatgatgaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
46024311 |
atcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaagaaactatagtttgttctattcctgatgatgaa |
46024410 |
T |
|
| Q |
611 |
ggttct |
616 |
Q |
| |
|
|||||| |
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|
| T |
46024411 |
ggttct |
46024416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Complemental strand, 46265556 - 46264951
Alignment:
| Q |
19 |
tacataagcatttaatttcttattgatcaattagtccacaacttcttttcataaacaaactctttttctcagactctcatggaaaacacagacaccttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
46265556 |
tacataagcatttaatttcttattgatcaattagtccacaacttcttttcataaacaaactctttttctcagactctcatggaaaacaaagacaccttaa |
46265457 |
T |
|
| Q |
119 |
aatttccacaccaaactcacaaaaacaacaatatttcattgatccct--------agacaaaccctatgagaacaaagaaaggaacactattaagaagat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
46265456 |
aatttccacaccaaactcacaaaaacaacaatatttctttgatccctcatgaaatagacaaaccctatgagaacaaagaaagaaacactattaagaagat |
46265357 |
T |
|
| Q |
211 |
tccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgagacaaaggccatcaggaagatggatagctgagatcaaagactcatcacagaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46265356 |
tccaaaaacatcaaacaaaggtcatcagaaaaagtatctaggagtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatcacagaaa |
46265257 |
T |
|
| Q |
311 |
ctaagactatggttaggtacttttgatagagcagaagatgctgctttgtcatatgattctgctgcaaggcttcttagaggaagaaatgccaaaactaact |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46265256 |
ctaagactatggttaggtacttttgatagagcagaagatgctgctctgtcatatgattctgctgcaaggcttcttagaggaagaaatgccaaaactaact |
46265157 |
T |
|
| Q |
411 |
ttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccatgcagtttctgc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46265156 |
ttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaaccatgcagtttctta |
46265057 |
T |
|
| Q |
511 |
atcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaggaaactatagtctgttctattcctgatgatgaa |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
46265056 |
atcatcatctgtttattccactgtcatgatgccatggtaaaatgaccaacttgacgcgattgttgaagaaactatagtttgttctattcctgatgatgaa |
46264957 |
T |
|
| Q |
611 |
ggttct |
616 |
Q |
| |
|
|||||| |
|
|
| T |
46264956 |
ggttct |
46264951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 12508729 - 12508680
Alignment:
| Q |
254 |
gtgagacaaaggccatcaggaagatggatagctgagatcaaagactcatc |
303 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
12508729 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
12508680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 3160225 - 3160325
Alignment:
| Q |
254 |
gtgagacaaaggccatcaggaagatggatagctgagatcaaagactcatcacagaaactaagactatggttaggtacttttgatagagcagaagatgctg |
353 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||| | ||||| ||||| | |||||||| |||||||||| ||| ||||| |||| |
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|
| T |
3160225 |
gtgagacaaaggccatcaggaagatgggtagctgagataaaagataccattcagaagataagagtttggttaggaacttttgatacagctgaagaagctg |
3160324 |
T |
|
| Q |
354 |
c |
354 |
Q |
| |
|
| |
|
|
| T |
3160325 |
c |
3160325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 33274382 - 33274344
Alignment:
| Q |
260 |
caaaggccatcaggaagatggatagctgagatcaaagac |
298 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
33274382 |
caaaggccatcagggagatgggtagctgagatcaaagac |
33274344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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