View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4227_high_24 (Length: 250)
Name: NF4227_high_24
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4227_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37619642 - 37619883
Alignment:
| Q |
1 |
aaaagtgcacaaatgtaaaagactttgaaaattaattgcagaaacttataagtacataaatataaatgaaaatcatgtaaatcaaactaagagtaaagcg |
100 |
Q |
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| T |
37619642 |
aaaagtgcacaaatgtaaaagactttgaaaattaattgcagaaacttataagtacataaatataaatgaaaatcatgtaaatcaaactaagagtaaaccg |
37619741 |
T |
|
| Q |
101 |
tgttaaattaaatttgacnnnnnnntaaatgatctacgtaattaaataccaaaaatatacgatcatttagagttgtatgtgatttttgaaatgcattaag |
200 |
Q |
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|||||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37619742 |
tgttaaattaaatttgacaaaaaaataaatgacctacgtaatcaaataccaaaaatagacgatcatttagagttttatgtgatttttgaaatgcattaag |
37619841 |
T |
|
| Q |
201 |
caactctcgttacaaagtcttcaaaccttatagagaattatc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37619842 |
caactctcgttacaaagtcttcaaaccttatagagaagtatc |
37619883 |
T |
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