View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4227_high_6 (Length: 432)

Name: NF4227_high_6
Description: NF4227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4227_high_6
NF4227_high_6
[»] chr1 (10 HSPs)
chr1 (1-180)||(17516748-17516926)
chr1 (302-410)||(17517096-17517204)
chr1 (229-308)||(17516956-17517035)
chr1 (226-308)||(15774290-15774371)
chr1 (226-295)||(11405506-11405573)
chr1 (226-301)||(32635184-32635258)
chr1 (226-308)||(3532952-3533032)
chr1 (227-295)||(4354084-4354150)
chr1 (226-308)||(9769556-9769639)
chr1 (248-308)||(10256594-10256653)
[»] chr4 (9 HSPs)
chr4 (226-295)||(33076580-33076648)
chr4 (226-295)||(53815746-53815813)
chr4 (226-295)||(8690264-8690331)
chr4 (226-295)||(9693012-9693079)
chr4 (226-295)||(14149843-14149910)
chr4 (226-295)||(20753103-20753170)
chr4 (226-295)||(28520709-28520776)
chr4 (244-293)||(31587489-31587538)
chr4 (226-295)||(48968188-48968255)
[»] chr2 (4 HSPs)
chr2 (229-308)||(11837025-11837103)
chr2 (226-295)||(580761-580828)
chr2 (226-295)||(34018048-34018115)
chr2 (226-294)||(3179375-3179441)
[»] chr8 (8 HSPs)
chr8 (226-293)||(24074558-24074623)
chr8 (226-295)||(1588817-1588884)
chr8 (226-295)||(13702330-13702397)
chr8 (229-294)||(44070349-44070412)
chr8 (226-308)||(7649565-7649645)
chr8 (226-295)||(2800069-2800136)
chr8 (226-295)||(33570407-33570474)
chr8 (226-294)||(25689366-25689432)
[»] chr3 (12 HSPs)
chr3 (226-301)||(50724411-50724484)
chr3 (226-301)||(50788364-50788437)
chr3 (229-293)||(48173338-48173400)
chr3 (226-293)||(14417920-14417985)
chr3 (226-291)||(24136728-24136793)
chr3 (226-295)||(27183659-27183726)
chr3 (226-295)||(33206807-33206874)
chr3 (226-295)||(36727441-36727508)
chr3 (237-302)||(42823974-42824037)
chr3 (226-295)||(43566774-43566841)
chr3 (226-295)||(46328902-46328969)
chr3 (226-295)||(52030171-52030238)
[»] chr7 (8 HSPs)
chr7 (226-301)||(21882170-21882246)
chr7 (226-295)||(47635100-47635166)
chr7 (226-272)||(22047593-22047637)
chr7 (226-283)||(3948116-3948173)
chr7 (226-295)||(22797953-22798022)
chr7 (226-295)||(47552263-47552330)
chr7 (226-308)||(16916493-16916576)
chr7 (226-294)||(34948157-34948223)
[»] chr6 (4 HSPs)
chr6 (232-295)||(20568239-20568302)
chr6 (227-308)||(29284154-29284234)
chr6 (226-295)||(25020506-25020573)
chr6 (226-294)||(5134412-5134478)
[»] chr5 (2 HSPs)
chr5 (226-295)||(843346-843413)
chr5 (227-308)||(38230184-38230263)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 17516748 - 17516926
Alignment:
Q  1 taatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggctttctgaattctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516748 taatctcgtgacaaatttatcaaacagctgtcttttactatttggaaaaggtaatcagttttgtttaccatacttcttggtaggctttctgaattctgca 17516847  T
Q  101 taccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaacttcaagatgaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17516848 taccaatatagtttgaatttcttttaatcaattaccaatataatactattaagaagaagattaggaaactt-aagatgaa 17516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 17517096 - 17517204
Alignment:
Q  302 tacatattaatcatgcacaaagtcaaaaagacaagacnnnnnnnnnntatttgatatgtaaaagcatgtgtgattagtgtgaggaacattatatggtgcg 401  Q
    |||||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517096 tacataataatcatgcacaaagtcaaaaagacaagacaaaaaaaaaatatttgatatgtaaaagcatgtgtgattagtgtgaggaacattatatggtgcg 17517195  T
Q  402 catggcatg 410  Q
    |||||||||    
T  17517196 catggcatg 17517204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 17516956 - 17517035
Alignment:
Q  229 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 308  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||  |||||| |||||||||| |||||||||||||||    
T  17516956 aggtagtttagtggctagaaatttatctttataagatgaataagcggggtgtctgaggttcgaatccgaaccctacatat 17517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 15774290 - 15774371
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 308  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||   |||||||| |||||||| ||||| ||||||||||    
T  15774290 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctacatat 15774371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 11405573 - 11405506
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  11405573 gtcaggtagcttagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 11405506  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 32635258 - 32635184
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 301  Q
    |||| ||||| ||||||||||||||||| || | |||||||||||||   |||||||| ||||||||||| |||||    
T  32635258 gtcaagtagcctagtggctagaaattcacctct-taaggtgaataagtggggtgtccggggttcgaaccccaaccc 32635184  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 3532952 - 3533032
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 308  Q
    |||||||||| |||| ||||||| |||| ||| ||||||||||||||   |||||||| |||| |||||||| ||||||||||    
T  3532952 gtcaggtagcctagtagctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttggaacccgacccctacatat 3533032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 4354084 - 4354150
Alignment:
Q  227 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    ||||||||| | |||||||||| |||| ||||||||||||||||||   ||||||||| ||||||||||    
T  4354084 tcaggtagcctggtggctagaa-ttca-ctttataaggtgaataagtggggtgtccgaagttcgaaccc 4354150  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 9769556 - 9769639
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttat-aaggtgaataagcaaggtgtccgaggttcgaacccgaa-ccctacatat 308  Q
    ||||||||||||||||| ||| |||||| |||| | ||||||||||||   |||||||| ||||||||||| || ||||||||||    
T  9769556 gtcaggtagcttagtggttag-aattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatat 9769639  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 10256594 - 10256653
Alignment:
Q  248 aattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 308  Q
    ||||||||||| ||||||||||||| ||||| |||| ||||| ||||| |||| |||||||    
T  10256594 aattcatcttt-taaggtgaataagtaaggtatccggggttcaaaccccaaccatacatat 10256653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 33076648 - 33076580
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||| || ||||||||| ||||||||||||| | |||||||| |||||||||||    
T  33076648 gtcaggtagcatagtggctataa-ttcatctttttaaggtgaataagtagggtgtccggggttcgaaccc 33076580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 53815813 - 53815746
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||||||||  ||||||  |||||||||   |||||||| |||||||||||    
T  53815813 gtcaggtagcctagtggctagaaattcacttttata--gtgaataagtggggtgtccggggttcgaaccc 53815746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 8690331 - 8690264
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  8690331 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 8690264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 9693079 - 9693012
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  9693079 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 9693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 14149910 - 14149843
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  14149910 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 14149843  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 20753103 - 20753170
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  20753103 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtgtggtgtccggggttcgaaccc 20753170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 28520709 - 28520776
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  28520709 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 28520776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 31587538 - 31587489
Alignment:
Q  244 tagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 293  Q
    ||||||||||||||||||||||||||||| ||| ||| |||  |||||||    
T  31587538 tagaaattcatctttataaggtgaataagtaagatgttcgaaattcgaac 31587489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 48968188 - 48968255
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  48968188 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 48968255  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 11837103 - 11837025
Alignment:
Q  229 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 308  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||  ||||||||| |||||||| ||||| ||||||||||    
T  11837103 aggtagcctagtggctagaa-ttca-ctttataaggtgaataagtgaggtgtccggggttcgaaccccgacccctacatat 11837025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 580761 - 580828
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||   |||||||| |||||||||||    
T  580761 gtcaggtagcctagtggctagaa-ttcatctt-ataaggtgaataagtggggtgtccggggttcgaaccc 580828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 34018048 - 34018115
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||| ||||| |||| ||| ||||||||||||||   ||||||||||||||||||||    
T  34018048 gtcaggtagcctagtggttagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaaccc 34018115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 3179441 - 3179375
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 294  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| ||||||||||||    
T  3179441 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaacc 3179375  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 24074623 - 24074558
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 293  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||  |||||||||||||||||||    
T  24074623 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtccgaggttcgaac 24074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 1588884 - 1588817
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   ||||||||||||||||||||    
T  1588884 gtcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtggggtgtccgaggttcgaaccc 1588817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 13702330 - 13702397
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    ||||| ||||||||||||||||| |||| ||| ||||||||||||||  ||||||| |||||||||||||    
T  13702330 gtcagctagcttagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtctgaggttcgaaccc 13702397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 44070349 - 44070412
Alignment:
Q  229 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 294  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||| | |||||||||||||||||||    
T  44070349 aggtagtttagtggctagaa-ttcacctt-ataaggtgaataagtagggtgtccgaggttcgaacc 44070412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 7649645 - 7649565
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 308  Q
    |||||||||| |||||||||||| |||| |||  |||||||||||||   ||||| |||||||||||||| | ||||||||||    
T  7649645 gtcaggtagcctagtggctagaa-ttcaccttg-taaggtgaataagtggggtgttcgaggttcgaaccccagccctacatat 7649565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 2800136 - 2800069
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  2800136 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 2800069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 33570407 - 33570474
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||| |||| ||||||||||||| |||| ||| ||||||||||||||   ||||||||||||||||||||    
T  33570407 gtcaagtagtttagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccgaggttcgaaccc 33570474  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 25689366 - 25689432
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 294  Q
    |||||||||| |||||| ||||| |||| ||||||||||||| |||| | |||||||| ||||||||||    
T  25689366 gtcaggtagcctagtggttagaa-ttca-ctttataaggtgattaagtagggtgtccggggttcgaacc 25689432  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 50724484 - 50724411
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 301  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||   |||||||||||||||||||| |||||    
T  50724484 gtcaggtagcctagtggctagaa-ttca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccccaaccc 50724411  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 50788364 - 50788437
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 301  Q
    |||||||||| |||||||||||| |||| |||| |||||||||||||   |||||||||||||||||||| |||||    
T  50788364 gtcaggtagcctagtggctagaa-ttca-ctttttaaggtgaataagtggggtgtccgaggttcgaaccccaaccc 50788437  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 48173400 - 48173338
Alignment:
Q  229 aggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 293  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||  ||||||||| |||||||||    
T  48173400 aggtagcttagtggctagaa-ttcacctt-ataaggtgaataagtgaggtgtccggggttcgaac 48173338  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 14417985 - 14417920
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaac 293  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||   |||||||| |||||||||    
T  14417985 gtcaggtagcttagtggctag-aattca-ccttataaggtgaataagtggggtgtccggggttcgaac 14417920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 24136728 - 24136793
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcga 291  Q
    |||| ||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||    
T  24136728 gtcaagtagcctagtggctagaaattcacctttttaaagtgaataagtggggtgtccggggttcga 24136793  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 27183659 - 27183726
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||||||    
T  27183659 gtcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccc 27183726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 33206874 - 33206807
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  33206874 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 33206807  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 36727441 - 36727508
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||| |||||||||||||| |||| ||| ||||| ||||||||   ||||||||||||||||||||    
T  36727441 gtcaggtaacttagtggctagaa-ttcacctt-ataagatgaataagtggggtgtccgaggttcgaaccc 36727508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 42823974 - 42824037
Alignment:
Q  237 tagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccct 302  Q
    ||||||||||||||||| |||| ||| ||||||||| | |||||||||| ||||||||| ||||||    
T  42823974 tagtggctagaaattca-cttt-taaagtgaataagtagggtgtccgagattcgaaccccaaccct 42824037  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 43566774 - 43566841
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| |||||||||||||    
T  43566774 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaaccc 43566841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 46328902 - 46328969
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  46328902 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 46328969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 52030238 - 52030171
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| ||||||||| ||||||| |||| ||| ||||||||| | |||||||| |||||||||||    
T  52030238 gtcaggtagcctagtggctaaaaattca-cttt-taaagtgaataagtagggtgtccggggttcgaaccc 52030171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 21882170 - 21882246
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatcttt-ataaggtgaataagcaaggtgtccgaggttcgaacccgaaccc 301  Q
    |||| ||||| |||| |||||||||||| |||| ||||||||||||||| ||||||||| | ||| |||||| ||||    
T  21882170 gtcaagtagcctagtagctagaaattcacctttcataaggtgaataagcgaggtgtccgggcttcaaacccggaccc 21882246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 47635166 - 47635100
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||||||||   || ||| ||||||||   |||||||||||||||||||||    
T  47635166 gtcaggtagcctagtggctagaaattca---ttttaaagtgaataaatgaggtgtccgaggttcgaaccc 47635100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 22047637 - 22047593
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataag 272  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22047637 gtcaggtagcttagtggctag-aattcatc-ttataaggtgaataag 22047593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 3948173 - 3948116
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccg 283  Q
    |||| |||| ||||||||||||||||||  |||||||| ||||||||  |||||||||    
T  3948173 gtcaagtagtttagtggctagaaattcacatttataagatgaataagtgaggtgtccg 3948116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 22798022 - 22797953
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||| ||||| ||||||||||||||||  |||| || ||||||||||  ||| ||||| |||||||||||    
T  22798022 gtcaagtagcctagtggctagaaattcccctttttatggtgaataagtgaggagtccggggttcgaaccc 22797953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 47552330 - 47552263
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| | |||||||||| |||| ||| |||||||||||||| | |||||||| |||||||||||    
T  47552330 gtcaggtagcctggtggctagaa-ttcacctt-ataaggtgaataagtagggtgtccggggttcgaaccc 47552263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 16916576 - 16916493
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatc-tttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 308  Q
    |||| ||||||||||||||| ||||| ||| ||| |||| ||||||||  |||||||||| ||||||| ||||| ||||||||||    
T  16916576 gtcaagtagcttagtggcta-aaatttatcttttttaagctgaataagtgaggtgtccgaagttcgaaccccgacccctacatat 16916493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 34948223 - 34948157
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 294  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| ||||||||||    
T  34948223 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaacc 34948157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 20568239 - 20568302
Alignment:
Q  232 tagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||| ||||| ||||||||||| ||||||||||||||||||   ||||| || |||||||||||    
T  20568239 tagcgtagtgactagaaattcacctttataaggtgaataagtggggtgttcggggttcgaaccc 20568302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 29284234 - 29284154
Alignment:
Q  227 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaa-cccgaaccctacatat 308  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||   |||||||| |||||||| ||||| ||||||||||    
T  29284234 tcaggtagcctagtggctagaaattca-cttt-taaagtgaataagtggggtgtccggggttcgaaccccgatccctacatat 29284154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 25020506 - 25020573
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||||| |||||||||||    
T  25020506 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtccggggttcgaaccc 25020573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 5134412 - 5134478
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacc 294  Q
    |||||||||| |||||||||||| |||| ||| ||||||||||||||   |||||| ||||||||||||    
T  5134412 gtcaggtagcctagtggctagaa-ttcacctt-ataaggtgaataagtggggtgtctgaggttcgaacc 5134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 843346 - 843413
Alignment:
Q  226 gtcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaaccc 295  Q
    |||||||||| |||||||||||| ||||  |||||||||||||||||   |||||||| |||||||||||    
T  843346 gtcaggtagcctagtggctagaa-ttcaa-tttataaggtgaataagtggggtgtccggggttcgaaccc 843413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 38230184 - 38230263
Alignment:
Q  227 tcaggtagcttagtggctagaaattcatctttataaggtgaataagcaaggtgtccgaggttcgaacccgaaccctacatat 308  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||  ||||||||| | ||| ||||||| |||| |||||    
T  38230184 tcaggtagcatagtggctagaaattca-cttt-taaagtgaataagtgaggtgtccgggattcaaacccgacccctgcatat 38230263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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